Information for CLOCK(bHLH)/Liver-Clock-ChIP-Seq(GSE39860)/Homer (Motif 42)

C T A G G C A T G A T C C G T A A G T C T C A G G A C T C T A G
Reverse Opposite:
G A T C C T G A A G T C C T A G G C A T C T A G C G T A G A T C
p-value:1e-872
log p-value:-2.008e+03
FDR:NA
Information Content per bp:1.750
Number of Target Sequences with motif1448.0
Percentage of Target Sequences with motif40.83%
Number of Background Sequences with motif2100.3
Percentage of Background Sequences with motif5.17%
Average Position of motif in Targets0 +/- 0bp
Average Position of motif in Background0 +/- 0bp
Strand Bias (log2 ratio + to - strand density)0
Multiplicity (# of sites on avg that occur together)1
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

CLOCK(bHLH)/Liver-Clock-ChIP-Seq(GSE39860)/Homer

Match Rank:1
Score:1.00
Offset:0
Orientation:forward strand
Alignment:GHCACGTG
GHCACGTG
 C T A G G C A T G A T C C G T A A G T C T C A G G A C T C T A G
C T A G G C A T G A T C C G T A A G T C T C A G G A C T C T A G

BMAL1(bHLH)/Liver-Bmal1-ChIP-Seq(GSE39860)/Homer

Match Rank:2
Score:1.00
Offset:0
Orientation:forward strand
Alignment:GHCACGTG
GNCACGTG
 C T A G G C A T G A T C C G T A A G T C T C A G G A C T C T A G
C T A G C A G T T G A C C G T A G A T C T C A G G A C T C A T G

PHYPADRAFT_72483/MA1011.1/Jaspar

Match Rank:3
Score:0.98
Offset:0
Orientation:forward strand
Alignment:GHCACGTG--
GTCACGTGAC
 C T A G G C A T G A T C C G T A A G T C T C A G G A C T C T A G A C G T A C G T
T C A G C A G T G T A C C T G A G A T C C T A G G A C T C A T G G T C A A G T C

NPAS(bHLH)/Liver-NPAS-ChIP-Seq(GSE39860)/Homer

Match Rank:4
Score:0.98
Offset:2
Orientation:reverse strand
Alignment:GHCACGTG--
--CACGTGBN
 C T A G G C A T G A T C C G T A A G T C T C A G G A C T C T A G A C G T A C G T
A C G T A C G T G T A C C T G A A G T C C T A G G C A T C A T G A C G T G C T A

Arnt/MA0004.1/Jaspar

Match Rank:5
Score:0.98
Offset:2
Orientation:forward strand
Alignment:GHCACGTG
--CACGTG
 C T A G G C A T G A T C C G T A A G T C T C A G G A C T C T A G
A C G T A C G T G T A C C T G A A G T C A C T G A C G T A C T G

BIM2/MA0965.1/Jaspar

Match Rank:6
Score:0.98
Offset:0
Orientation:forward strand
Alignment:GHCACGTG--
GGCACGTGCC
 C T A G G C A T G A T C C G T A A G T C T C A G G A C T C T A G A C G T A C G T
T A C G C A T G G T A C C T G A G A T C C T A G G A C T C A T G G T A C A T G C

BIM2(bHLH)/col-BIM2-DAP-Seq(GSE60143)/Homer

Match Rank:7
Score:0.98
Offset:0
Orientation:reverse strand
Alignment:GHCACGTG----
NNCACGTGNNNN
 C T A G G C A T G A T C C G T A A G T C T C A G G A C T C T A G A C G T A C G T A C G T A C G T
C T G A C A T G G T A C C G T A G A T C C T A G G C A T A T C G G T C A G A C T G C A T G C A T

MNT/MA0825.1/Jaspar

Match Rank:8
Score:0.98
Offset:0
Orientation:reverse strand
Alignment:GHCACGTG--
NGCACGTGNT
 C T A G G C A T G A T C C G T A A G T C T C A G G A C T C T A G A C G T A C G T
C T A G A C T G G T A C G T C A A G T C T C A G C G A T C A T G A T C G G A C T

Mlxip/MA0622.1/Jaspar

Match Rank:9
Score:0.97
Offset:1
Orientation:reverse strand
Alignment:GHCACGTG-
-ACACGTGC
 C T A G G C A T G A T C C G T A A G T C T C A G G A C T C T A G A C G T
A C G T G T C A A G T C C G T A A G T C A C T G A C G T A C T G T A G C

At4g36780(BZR)/col-At4g36780-DAP-Seq(GSE60143)/Homer

Match Rank:10
Score:0.97
Offset:-4
Orientation:forward strand
Alignment:----GHCACGTG---
NNNNNNCACGTGNNN
 A C G T A C G T A C G T A C G T C T A G G C A T G A T C C G T A A G T C T C A G G A C T C T A G A C G T A C G T A C G T
C G A T C G T A C G A T C G A T A G T C C T G A G A T C C T G A G A T C C T A G G C A T C T A G G A C T T C A G G C T A