Information for ZKSCAN1(Zf)/HepG2-ZKSCAN1-ChIP-Seq(Encode)/Homer (Motif 412)

C T A G G A T C T C G A A T G C T C G A A G C T C T G A A C T G A C G T C T G A A C T G A C T G A C G T A G T C G A T C
Reverse Opposite:
C T A G T C A G T G C A A G T C A G T C A G C T C G T A G T A C A G C T T C G A A G C T A T C G A G C T C T A G G A T C
p-value:1e-1072
log p-value:-2.470e+03
FDR:NA
Information Content per bp:1.678
Number of Target Sequences with motif646.0
Percentage of Target Sequences with motif15.02%
Number of Background Sequences with motif58.9
Percentage of Background Sequences with motif0.13%
Average Position of motif in Targets0 +/- 0bp
Average Position of motif in Background0 +/- 0bp
Strand Bias (log2 ratio + to - strand density)0
Multiplicity (# of sites on avg that occur together)1
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

ZKSCAN1(Zf)/HepG2-ZKSCAN1-ChIP-Seq(Encode)/Homer

Match Rank:1
Score:1.00
Offset:0
Orientation:forward strand
Alignment:GCACAYAGTAGGKCY
GCACAYAGTAGGKCY
 C T A G G A T C T C G A A T G C T C G A A G C T C T G A A C T G A C G T C T G A A C T G A C T G A C G T A G T C G A T C
C T A G G A T C T C G A A T G C T C G A A G C T C T G A A C T G A C G T C T G A A C T G A C T G A C G T A G T C G A T C

ZKSCAN1/MA1585.1/Jaspar

Match Rank:2
Score:0.85
Offset:4
Orientation:forward strand
Alignment:GCACAYAGTAGGKCY
----ATAGTAGGTG-
 C T A G G A T C T C G A A T G C T C G A A G C T C T G A A C T G A C G T C T G A A C T G A C T G A C G T A G T C G A T C
A C G T A C G T A C G T A C G T T C G A A G C T T G C A C T A G A C G T G T C A A T C G C A T G A G C T T A C G A C G T

MSI(RRM)/Drosophila_melanogaster-RNCMPT00100-PBM/HughesRNA

Match Rank:3
Score:0.81
Offset:6
Orientation:forward strand
Alignment:GCACAYAGTAGGKCY
------AGTAGGG--
 C T A G G A T C T C G A A T G C T C G A A G C T C T G A A C T G A C G T C T G A A C T G A C T G A C G T A G T C G A T C
A C G T A C G T A C G T A C G T A C G T A C G T C G T A A C T G A C G T C G T A A C T G C A T G C T A G A C G T A C G T

MSI(RRM)/Drosophila_melanogaster-RNCMPT00099-PBM/HughesRNA

Match Rank:4
Score:0.78
Offset:6
Orientation:forward strand
Alignment:GCACAYAGTAGGKCY
------AGTAGGT--
 C T A G G A T C T C G A A T G C T C G A A G C T C T G A A C T G A C G T C T G A A C T G A C T G A C G T A G T C G A T C
A C G T A C G T A C G T A C G T A C G T A C G T C G T A A C T G A C G T C G T A A C T G C A T G C G A T A C G T A C G T

MSI(RRM)/Drosophila_melanogaster-RNCMPT00040-PBM/HughesRNA

Match Rank:5
Score:0.76
Offset:6
Orientation:forward strand
Alignment:GCACAYAGTAGGKCY
------AGTAGTT--
 C T A G G A T C T C G A A T G C T C G A A G C T C T G A A C T G A C G T C T G A A C T G A C T G A C G T A G T C G A T C
A C G T A C G T A C G T A C G T A C G T A C G T C G T A A C T G A C G T C G T A A C T G C A G T C G A T A C G T A C G T

SRP54(RRM)/Drosophila_melanogaster-RNCMPT00272-PBM/HughesRNA

Match Rank:6
Score:0.71
Offset:7
Orientation:forward strand
Alignment:GCACAYAGTAGGKCY
-------GTAGGTA-
 C T A G G A T C T C G A A T G C T C G A A G C T C T G A A C T G A C G T C T G A A C T G A C T G A C G T A G T C G A T C
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C T G A C G T C T G A A C T G A C T G C A G T T C G A A C G T

Tb_0252(RRM)/Trypanosoma_brucei-RNCMPT00252-PBM/HughesRNA

Match Rank:7
Score:0.69
Offset:6
Orientation:forward strand
Alignment:GCACAYAGTAGGKCY
------AGTAGAT--
 C T A G G A T C T C G A A T G C T C G A A G C T C T G A A C T G A C G T C T G A A C T G A C T G A C G T A G T C G A T C
A C G T A C G T A C G T A C G T A C G T A C G T C G T A A C T G A C G T C G T A A C T G C T G A C G A T A C G T A C G T

HRB98DE(RRM)/Drosophila_melanogaster-RNCMPT00096-PBM/HughesRNA

Match Rank:8
Score:0.68
Offset:6
Orientation:forward strand
Alignment:GCACAYAGTAGGKCY
------GGTAGGG--
 C T A G G A T C T C G A A T G C T C G A A G C T C T G A A C T G A C G T C T G A A C T G A C T G A C G T A G T C G A T C
A C G T A C G T A C G T A C G T A C G T A C G T C T A G A C T G A C G T C G T A C T A G A C T G A C T G A C G T A C G T

PB0205.1_Zic1_2/Jaspar

Match Rank:9
Score:0.68
Offset:0
Orientation:forward strand
Alignment:GCACAYAGTAGGKCY
CCACACAGCAGGAGA
 C T A G G A T C T C G A A T G C T C G A A G C T C T G A A C T G A C G T C T G A A C T G A C T G A C G T A G T C G A T C
A G T C G T A C C G T A T G A C T C G A A G T C G C T A C T A G A G T C C T G A A C T G A C T G G T C A T C A G C G T A

HRB87F(RRM)/Drosophila_melanogaster-RNCMPT00029-PBM/HughesRNA

Match Rank:10
Score:0.68
Offset:6
Orientation:forward strand
Alignment:GCACAYAGTAGGKCY
------GGTAGGG--
 C T A G G A T C T C G A A T G C T C G A A G C T C T G A A C T G A C G T C T G A A C T G A C T G A C G T A G T C G A T C
A C G T A C G T A C G T A C G T A C G T A C G T C T A G A C T G A C G T C G T A C T A G A C T G A C T G A C G T A C G T