Information for Zic(Zf)/Cerebellum-ZIC1.2-ChIP-Seq(GSE60731)/Homer (Motif 411)

A G T C G T A C A G C T C T A G A G T C C G A T A C T G C G T A A C T G G T C A
Reverse Opposite:
C A G T G T A C G C A T A G T C G C T A A C T G A G T C C T G A A C T G A C T G
p-value:1e-891
log p-value:-2.052e+03
FDR:NA
Information Content per bp:1.729
Number of Target Sequences with motif3405.0
Percentage of Target Sequences with motif20.22%
Number of Background Sequences with motif1870.4
Percentage of Background Sequences with motif5.74%
Average Position of motif in Targets0 +/- 0bp
Average Position of motif in Background0 +/- 0bp
Strand Bias (log2 ratio + to - strand density)0
Multiplicity (# of sites on avg that occur together)1
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Zic(Zf)/Cerebellum-ZIC1.2-ChIP-Seq(GSE60731)/Homer

Match Rank:1
Score:1.00
Offset:0
Orientation:forward strand
Alignment:CCTGCTGAGH
CCTGCTGAGH
 A G T C G T A C A G C T C T A G A G T C C G A T A C T G C G T A A C T G G T C A
A G T C G T A C A G C T C T A G A G T C C G A T A C T G C G T A A C T G G T C A

PB0207.1_Zic3_2/Jaspar

Match Rank:2
Score:0.94
Offset:-3
Orientation:reverse strand
Alignment:---CCTGCTGAGH--
NNTCCTGCTGTGNNN
 A C G T A C G T A C G T A G T C G T A C A G C T C T A G A G T C C G A T A C T G C G T A A C T G G T C A A C G T A C G T
G C A T A T C G C A G T T G A C T G A C G A C T T C A G A G T C C G A T C T A G G A C T A C T G G A T C G C A T G T A C

PB0206.1_Zic2_2/Jaspar

Match Rank:3
Score:0.94
Offset:-3
Orientation:reverse strand
Alignment:---CCTGCTGAGH--
TCNCCTGCTGNGNNN
 A C G T A C G T A C G T A G T C G T A C A G C T C T A G A G T C C G A T A C T G C G T A A C T G G T C A A C G T A C G T
G C A T A G T C A C G T T G A C T G A C G A C T T C A G A G T C C G A T C T A G A G C T A C T G G A C T C A T G C T A G

PB0205.1_Zic1_2/Jaspar

Match Rank:4
Score:0.94
Offset:-3
Orientation:reverse strand
Alignment:---CCTGCTGAGH--
TNTCCTGCTGTGNNG
 A C G T A C G T A C G T A G T C G T A C A G C T C T A G A G T C C G A T A C T G C G T A A C T G G T C A A C G T A C G T
G C A T A G T C C A G T T G A C G T A C G A C T T C A G A G T C C G A T C T A G A G C T A C T G G C A T C A T G T C A G

Zic2(Zf)/ESC-Zic2-ChIP-Seq(SRP197560)/Homer

Match Rank:5
Score:0.92
Offset:-3
Orientation:reverse strand
Alignment:---CCTGCTGAGH
CCYCCYGCTGDG-
 A C G T A C G T A C G T A G T C G T A C A G C T C T A G A G T C C G A T A C T G C G T A A C T G G T C A
A G T C A T G C G A T C A G T C G T A C G A C T C T A G A G T C C G A T A C T G C A G T A C T G A C G T

Zic2/MA1629.1/Jaspar

Match Rank:6
Score:0.91
Offset:-3
Orientation:reverse strand
Alignment:---CCTGCTGAGH-
CCCCCTGCTGTGNN
 A C G T A C G T A C G T A G T C G T A C A G C T C T A G A G T C C G A T A C T G C G T A A C T G G T C A A C G T
A G T C A G T C G A T C T A G C G T A C G A C T T C A G A T G C C A G T A T C G C G A T A C T G G T C A A C T G

Zic3(Zf)/mES-Zic3-ChIP-Seq(GSE37889)/Homer

Match Rank:7
Score:0.91
Offset:-5
Orientation:forward strand
Alignment:-----CCTGCTGAGH
GGCCYCCTGCTGDGH
 A C G T A C G T A C G T A C G T A C G T A G T C G T A C A G C T C T A G A G T C C G A T A C T G C G T A A C T G G T C A
C A T G T A C G T A G C G A T C G A T C A T G C G T A C G A C T T C A G A T G C C G A T A T C G C A G T A C T G G T A C

Zic1::Zic2/MA1628.1/Jaspar

Match Rank:8
Score:0.90
Offset:-2
Orientation:reverse strand
Alignment:--CCTGCTGAGH
NNCCTGCTGNG-
 A C G T A C G T A G T C G T A C A G C T C T A G A G T C C G A T A C T G C G T A A C T G G T C A
A G T C A T G C T G A C T A G C A G C T T C A G A T G C A C G T T C A G A G C T A T C G A C G T

Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:9
Score:0.90
Offset:-3
Orientation:reverse strand
Alignment:---CCTGCTGAGH
CCCCCTGCTGTG-
 A C G T A C G T A C G T A G T C G T A C A G C T C T A G A G T C C G A T A C T G C G T A A C T G G T C A
G A T C G A T C G A T C G T A C G T A C G C A T C T A G A G T C G C A T A C T G C G A T A C T G A C G T

CDC5(MYB)/Arabidopsis thaliana/AthaMap

Match Rank:10
Score:0.74
Offset:0
Orientation:reverse strand
Alignment:CCTGCTGAGH-
CGCGCTGAGCN
 A G T C G T A C A G C T C T A G A G T C C G A T A C T G C G T A A C T G G T C A A C G T
A T G C T A C G A G T C A T C G G T A C C G A T C T A G C G T A T A C G A T G C A G T C