Information for CHR(?)/Hela-CellCycle-Expression/Homer (Motif 41)

T A G C T C A G C A T G G C A T A G C T C G A T A T G C C G T A C G T A G T C A
Reverse Opposite:
A C G T A C G T A C G T T A C G C G T A C T G A C G T A G T A C A G T C A T C G
p-value:
log p-value:-8.207e+01
FDR:0.000
Information Content per bp:1.744
Number of Target Sequences with motif
Percentage of Target Sequences with motif
Number of Background Sequences with motif
Percentage of Background Sequences with motif
Average Position of motif in Targets0 +/- 0bp
Average Position of motif in Background0 +/- 0bp
Strand Bias (log2 ratio + to - strand density)0
Multiplicity (# of sites on avg that occur together)1
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

CHR(?)/Hela-CellCycle-Expression/Homer

Match Rank:1
Score:1.00
Offset:0
Orientation:forward strand
Alignment:CGGTTTCAAA
CGGTTTCAAA
 T A G C T C A G C A T G G C A T A G C T C G A T A T G C C G T A C G T A G T C A
T A G C T C A G C A T G G C A T A G C T C G A T A T G C C G T A C G T A G T C A

LIN54/MA0619.1/Jaspar

Match Rank:2
Score:0.86
Offset:2
Orientation:reverse strand
Alignment:CGGTTTCAAA-
--NATTCAAAT
 T A G C T C A G C A T G G C A T A G C T C G A T A T G C C G T A C G T A G T C A A C G T
A C G T A C G T C T G A C T G A A C G T A C G T A G T C C T G A C G T A C G T A G C A T

TCX2(CPP)/colamp-TCX2-DAP-Seq(GSE60143)/Homer

Match Rank:3
Score:0.84
Offset:2
Orientation:reverse strand
Alignment:CGGTTTCAAA----
--NDTTYRAAWWNN
 T A G C T C A G C A T G G C A T A G C T C G A T A T G C C G T A C G T A G T C A A C G T A C G T A C G T A C G T
A C G T A C G T C G A T C T A G A C G T A C G T A G T C C T G A C G T A C G T A G C T A G C A T T A G C C G T A

SOL1(CPP)/colamp-SOL1-DAP-Seq(GSE60143)/Homer

Match Rank:4
Score:0.83
Offset:1
Orientation:reverse strand
Alignment:CGGTTTCAAA-
-NDATTTAAAT
 T A G C T C A G C A T G G C A T A G C T C G A T A T G C C G T A C G T A G T C A A C G T
A C G T C G T A C G T A C G T A A C G T A G C T A G C T C T G A C G T A C T G A G C A T

Unknown6/Drosophila-Promoters/Homer

Match Rank:5
Score:0.82
Offset:1
Orientation:forward strand
Alignment:CGGTTTCAAA-
-AATTTTAAAA
 T A G C T C A G C A T G G C A T A G C T C G A T A T G C C G T A C G T A G T C A A C G T
A C G T C G T A G C T A C G A T A C G T A G C T A G C T C T G A G T C A C G T A G C T A

AT2G20110(CPP)/colamp-AT2G20110-DAP-Seq(GSE60143)/Homer

Match Rank:6
Score:0.81
Offset:3
Orientation:forward strand
Alignment:CGGTTTCAAA---
---ATTYAAATHY
 T A G C T C A G C A T G G C A T A G C T C G A T A T G C C G T A C G T A G T C A A C G T A C G T A C G T
A C G T A C G T A C G T C T G A G A C T A C G T A G C T C T G A C G T A C G T A G A C T G T C A G A T C

TSO1(CPP)/col-TSO1-DAP-Seq(GSE60143)/Homer

Match Rank:7
Score:0.81
Offset:1
Orientation:forward strand
Alignment:CGGTTTCAAA-
-RAATTTRAAW
 T A G C T C A G C A T G G C A T A G C T C G A T A T G C C G T A C G T A G T C A A C G T
A C G T T C G A C T G A C G T A G C A T C G A T A G C T T C G A T G C A T G C A G C A T

At2g41835(C2H2)/col-At2g41835-DAP-Seq(GSE60143)/Homer

Match Rank:8
Score:0.80
Offset:2
Orientation:reverse strand
Alignment:CGGTTTCAAA
--TTTTCAAA
 T A G C T C A G C A T G G C A T A G C T C G A T A T G C C G T A C G T A G T C A
A C G T A C G T A C G T A C G T A C G T A C G T A T G C C G T A C G T A C G T A

pan/dmmpmm(SeSiMCMC)/fly

Match Rank:9
Score:0.77
Offset:3
Orientation:forward strand
Alignment:CGGTTTCAAA
---TATCAAA
 T A G C T C A G C A T G G C A T A G C T C G A T A T G C C G T A C G T A G T C A
A C G T A C G T A C G T A C G T C G T A G A C T G A T C C G T A G C T A C G T A

pan/dmmpmm(Papatsenko)/fly

Match Rank:10
Score:0.77
Offset:4
Orientation:reverse strand
Alignment:CGGTTTCAAA-
----ATCAAAG
 T A G C T C A G C A T G G C A T A G C T C G A T A T G C C G T A C G T A G T C A A C G T
A C G T A C G T A C G T A C G T C G T A A G C T A G T C C G T A C G T A C G T A T A C G