Information for THRb(NR)/Liver-NR1A2-ChIP-Seq(GSE52613)/Homer (Motif 388)

G C A T T C A G C T G A A T C G A C T G C G A T G A T C C T G A
Reverse Opposite:
A G C T C T A G G C T A T G A C A T G C A G C T A G T C C G T A
p-value:1e-3546
log p-value:-8.166e+03
FDR:NA
Information Content per bp:1.692
Number of Target Sequences with motif22247.0
Percentage of Target Sequences with motif58.85%
Number of Background Sequences with motif10005.9
Percentage of Background Sequences with motif27.43%
Average Position of motif in Targets0 +/- 0bp
Average Position of motif in Background0 +/- 0bp
Strand Bias (log2 ratio + to - strand density)0
Multiplicity (# of sites on avg that occur together)1
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

THRb(NR)/Liver-NR1A2-ChIP-Seq(GSE52613)/Homer

Match Rank:1
Score:1.00
Offset:0
Orientation:forward strand
Alignment:TRAGGTCA
TRAGGTCA
 G C A T T C A G C T G A A T C G A C T G C G A T G A T C C T G A
G C A T T C A G C T G A A T C G A C T G C G A T G A T C C T G A

MF0004.1_Nuclear_Receptor_class/Jaspar

Match Rank:2
Score:0.94
Offset:2
Orientation:forward strand
Alignment:TRAGGTCA
--AGGTCA
 G C A T T C A G C T G A A T C G A C T G C G A T G A T C C T G A
A C G T A C G T C T G A C A T G C A T G C G A T G T A C T G C A

EAR2(NR)/K562-NR2F6-ChIP-Seq(Encode)/Homer

Match Rank:3
Score:0.94
Offset:-4
Orientation:forward strand
Alignment:----TRAGGTCA
NRBCARRGGTCA
 A C G T A C G T A C G T A C G T G C A T T C A G C T G A A T C G A C T G C G A T G A T C C T G A
T C A G T C A G A C G T G T A C G C T A T C A G C T G A A C T G A C T G A G C T A G T C C G T A

NR2C1/MA1535.1/Jaspar

Match Rank:4
Score:0.94
Offset:0
Orientation:forward strand
Alignment:TRAGGTCA-
CGAGGTCAC
 G C A T T C A G C T G A A T C G A C T G C G A T G A T C C T G A A C G T
G T A C C T A G T C G A A C T G A C T G A C G T A T G C C T G A G A T C

COUP-TFII(NR)/K562-NR2F1-ChIP-Seq(Encode)/Homer

Match Rank:5
Score:0.93
Offset:-4
Orientation:forward strand
Alignment:----TRAGGTCA
GKBCARAGGTCA
 A C G T A C G T A C G T A C G T G C A T T C A G C T G A A T C G A C T G C G A T G A T C C T G A
T A C G A C T G A G C T G T A C C G T A T C G A C T G A A C T G C A T G A C G T A G T C C G T A

COUP-TFII(NR)/Artia-Nr2f2-ChIP-Seq(GSE46497)/Homer

Match Rank:6
Score:0.93
Offset:0
Orientation:forward strand
Alignment:TRAGGTCA
AGRGGTCA
 G C A T T C A G C T G A A T C G A C T G C G A T G A T C C T G A
T C G A T C A G T C G A A C T G C A T G A C G T A G T C C T G A

NR4A2/MA0160.1/Jaspar

Match Rank:7
Score:0.92
Offset:1
Orientation:forward strand
Alignment:TRAGGTCA-
-AAGGTCAC
 G C A T T C A G C T G A A T C G A C T G C G A T G A T C C T G A A C G T
A C G T C T G A C T G A A C T G C T A G G A C T A G T C C G T A T G A C

NR2C2(var.2)/MA1536.1/Jaspar

Match Rank:8
Score:0.92
Offset:1
Orientation:forward strand
Alignment:TRAGGTCA-
-GAGGTCAT
 G C A T T C A G C T G A A T C G A C T G C G A T G A T C C T G A A C G T
A C G T T C A G T C G A A C T G A C T G A C G T A G T C C T G A G C A T

NR2F2/MA1111.1/Jaspar

Match Rank:9
Score:0.91
Offset:-1
Orientation:forward strand
Alignment:-TRAGGTCA--
CAAAGGTCAAA
 A C G T G C A T T C A G C T G A A T C G A C T G C G A T G A T C C T G A A C G T A C G T
G A T C G T C A C G T A C T G A C A T G C T A G A C G T G A T C C T G A C T G A C T G A

RORA/MA0071.1/Jaspar

Match Rank:10
Score:0.90
Offset:-2
Orientation:forward strand
Alignment:--TRAGGTCA
ATCAAGGTCA
 A C G T A C G T G C A T T C A G C T G A A T C G A C T G C G A T G A T C C T G A
C G T A G C A T T G A C C G T A C T G A A C T G A C T G A C G T A G T C C G T A