Information for Tbox:Smad(T-box,MAD)/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer (Motif 363)

C T G A C T A G A T C G G C A T A C T G G T A C A T G C C G T A A C T G G C T A A G T C C G T A
Reverse Opposite:
G C A T A C T G C G A T A G T C A C G T T A C G C A T G A G T C C G T A T A G C G A T C G A C T
p-value:1e-313
log p-value:-7.221e+02
FDR:NA
Information Content per bp:1.684
Number of Target Sequences with motif375.0
Percentage of Target Sequences with motif17.93%
Number of Background Sequences with motif503.9
Percentage of Background Sequences with motif1.13%
Average Position of motif in Targets52.6 +/- 23.8bp
Average Position of motif in Background45.9 +/- 34.6bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.03
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Tbox:Smad(T-box,MAD)/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer

Match Rank:1
Score:1.00
Offset:0
Orientation:forward strand
Alignment:AGGTGHCAGACA
AGGTGHCAGACA
 C T G A C T A G A T C G G C A T A C T G G T A C A T G C C G T A A C T G G C T A A G T C C G T A
C T G A C T A G A T C G G C A T A C T G G T A C A T G C C G T A A C T G G C T A A G T C C G T A

SMAD2::SMAD3::SMAD4/MA0513.1/Jaspar

Match Rank:2
Score:0.98
Offset:0
Orientation:reverse strand
Alignment:AGGTGHCAGACA-
AGGTGNCAGACAG
 C T G A C T A G A T C G G C A T A C T G G T A C A T G C C G T A A C T G G C T A A G T C C G T A A C G T
C T G A C T A G A T C G C G A T A T C G G T C A A T G C C G T A A C T G T G C A A G T C C G T A A T C G

CELF2(RRM)/JSL1-CELF2-CLIP-Seq(GSE71264)/Homer

Match Rank:3
Score:0.75
Offset:1
Orientation:forward strand
Alignment:AGGTGHCAGACA
-RGTGTCAG---
 C T G A C T A G A T C G G C A T A C T G G T A C A T G C C G T A A C T G G C T A A G T C C G T A
A C G T C T G A A C T G A C G T A C T G A C G T A G T C C G T A A C T G A C G T A C G T A C G T

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:4
Score:0.74
Offset:5
Orientation:reverse strand
Alignment:AGGTGHCAGACA-
-----CCAGACAG
 C T G A C T A G A T C G G C A T A C T G G T A C A T G C C G T A A C T G G C T A A G T C C G T A A C G T
A C G T A C G T A C G T A C G T A C G T A T G C A G T C T G C A C T A G G T C A G T A C C T G A T A C G

Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer

Match Rank:5
Score:0.74
Offset:5
Orientation:reverse strand
Alignment:AGGTGHCAGACA---
-----CCAGACRSVB
 C T G A C T A G A T C G G C A T A C T G G T A C A T G C C G T A A C T G G C T A A G T C C G T A A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T T A G C A G T C C G T A A C T G C G T A A G T C C T A G A T C G T A G C A T G C

Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer

Match Rank:6
Score:0.73
Offset:5
Orientation:reverse strand
Alignment:AGGTGHCAGACA-
-----BCAGACWA
 C T G A C T A G A T C G G C A T A C T G G T A C A T G C C G T A A C T G G C T A A G T C C G T A A C G T
A C G T A C G T A C G T A C G T A C G T A T G C A G T C C G T A C T A G G T C A A G T C C G T A T C G A

Meis1(Homeobox)/MastCells-Meis1-ChIP-Seq(GSE48085)/Homer

Match Rank:7
Score:0.72
Offset:1
Orientation:reverse strand
Alignment:AGGTGHCAGACA
-VBTGWCAGCB-
 C T G A C T A G A T C G G C A T A C T G G T A C A T G C C G T A A C T G G C T A A G T C C G T A
A C G T T C A G A T G C A C G T A C T G C G T A A G T C C G T A A T C G A T G C A G T C A C G T

AtGRF6(GRF)/col-AtGRF6-DAP-Seq(GSE60143)/Homer

Match Rank:8
Score:0.71
Offset:2
Orientation:forward strand
Alignment:AGGTGHCAGACA-----
--NTGTCAGADNNNNNN
 C T G A C T A G A T C G G C A T A C T G G T A C A T G C C G T A A C T G G C T A A G T C C G T A A C G T A C G T A C G T A C G T A C G T
A C G T A C G T C A T G A G C T A C T G A C G T A G T C C G T A A C T G C G T A C T G A C G T A G C T A C G T A C G A T G C A T C G T A

sma-4/MA0925.1/Jaspar

Match Rank:9
Score:0.71
Offset:3
Orientation:reverse strand
Alignment:AGGTGHCAGACA--
---NNCCAGACANN
 C T G A C T A G A T C G G C A T A C T G G T A C A T G C C G T A A C T G G C T A A G T C C G T A A C G T A C G T
A C G T A C G T A C G T A C T G A G C T G T A C A G T C C G T A A C T G C G T A G T A C C G T A A G T C A C G T

Hand1::Tcf3/MA0092.1/Jaspar

Match Rank:10
Score:0.70
Offset:2
Orientation:reverse strand
Alignment:AGGTGHCAGACA
--ATGCCAGACN
 C T G A C T A G A T C G G C A T A C T G G T A C A T G C C G T A A C T G G C T A A G T C C G T A
A C G T A C G T C G T A G C A T C A T G T A G C A G T C C G T A C T A G C G T A G A T C T A G C