Information for TATA-Box(TBP)/Promoter/Homer (Motif 361)

A T G C G A T C G A C T A G C T C G A T C G A T G T C A C G A T T C G A A T C G T A G C T A G C
Reverse Opposite:
A T C G A T C G A T G C A G C T G C T A A C G T C G T A C G T A C T G A C T G A C T A G T A C G
p-value:
log p-value:-3.995e+02
FDR:0.000
Information Content per bp:1.640
Number of Target Sequences with motif
Percentage of Target Sequences with motif
Number of Background Sequences with motif
Percentage of Background Sequences with motif
Average Position of motif in Targets0 +/- 0bp
Average Position of motif in Background0 +/- 0bp
Strand Bias (log2 ratio + to - strand density)0
Multiplicity (# of sites on avg that occur together)1
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

TATA-Box(TBP)/Promoter/Homer

Match Rank:1
Score:1.00
Offset:0
Orientation:forward strand
Alignment:CCTTTTATAGNC
CCTTTTATAGNC
 A T G C G A T C G A C T A G C T C G A T C G A T G T C A C G A T T C G A A T C G T A G C T A G C
A T G C G A T C G A C T A G C T C G A T C G A T G T C A C G A T T C G A A T C G T A G C T A G C

TATA-box/Drosophila-Promoters/Homer

Match Rank:2
Score:0.88
Offset:-2
Orientation:reverse strand
Alignment:--CCTTTTATAGNC
BSGCTTTTATAG--
 A C G T A C G T A T G C G A T C G A C T A G C T C G A T C G A T G T C A C G A T T C G A A T C G T A G C T A G C
A T G C A T C G A T C G G A T C A C G T A C G T C G A T A C G T C G T A A C G T C G T A A T C G A C G T A C G T

POL012.1_TATA-Box/Jaspar

Match Rank:3
Score:0.84
Offset:-5
Orientation:reverse strand
Alignment:-----CCTTTTATAGNC
NNNNNNCTTTTATAN--
 A C G T A C G T A C G T A C G T A C G T A T G C G A T C G A C T A G C T C G A T C G A T G T C A C G A T T C G A A T C G T A G C T A G C
A T G C T A G C A T G C A T G C A T C G A T G C A G T C G C A T G A C T C G A T G C A T C T G A G C A T T C G A A T G C A C G T A C G T

TBP/MA0108.2/Jaspar

Match Rank:4
Score:0.84
Offset:-5
Orientation:reverse strand
Alignment:-----CCTTTTATAGNC
NNNNNNCTTTTATAN--
 A C G T A C G T A C G T A C G T A C G T A T G C G A T C G A C T A G C T C G A T C G A T G T C A C G A T T C G A A T C G T A G C T A G C
A T G C T A G C A T G C A T G C A T C G A T G C A G T C G C A T G A C T C G A T G C A T C T G A G C A T T C G A A T G C A C G T A C G T

KHDRBS1(KH)/Mus_musculus-RNCMPT00062-PBM/HughesRNA

Match Rank:5
Score:0.83
Offset:0
Orientation:reverse strand
Alignment:CCTTTTATAGNC
CCTTTTA-----
 A T G C G A T C G A C T A G C T C G A T C G A T G T C A C G A T T C G A A T C G T A G C T A G C
A T G C A T G C A C G T C G A T A C G T A C G T C G T A A C G T A C G T A C G T A C G T A C G T

KHDRBS1(KH)/Homo_sapiens-RNCMPT00169-PBM/HughesRNA

Match Rank:6
Score:0.78
Offset:1
Orientation:reverse strand
Alignment:CCTTTTATAGNC
-CTTTTAT----
 A T G C G A T C G A C T A G C T C G A T C G A T G T C A C G A T T C G A A T C G T A G C T A G C
A C G T A G T C A C G T C G A T A C G T C G A T C G T A C G A T A C G T A C G T A C G T A C G T

Hoxa11(Homeobox)/ChickenMSG-Hoxa11.Flag-ChIP-Seq(GSE86088)/Homer

Match Rank:7
Score:0.77
Offset:2
Orientation:forward strand
Alignment:CCTTTTATAGNC
--TTTTATGGCM
 A T G C G A T C G A C T A G C T C G A T C G A T G T C A C G A T T C G A A T C G T A G C T A G C
A C G T A C G T C A G T C G A T G C A T G C A T G T C A A G C T C A T G C T A G A T G C G T A C

Unknown(Homeobox)/Limb-p300-ChIP-Seq/Homer

Match Rank:8
Score:0.76
Offset:2
Orientation:reverse strand
Alignment:CCTTTTATAGNC
--TTTAATTGCN
 A T G C G A T C G A C T A G C T C G A T C G A T G T C A C G A T T C G A A T C G T A G C T A G C
A C G T A C G T C G A T A G C T C G A T G C T A C G T A G A C T C A G T C T A G T A G C A T G C

Hoxd11(Homeobox)/ChickenMSG-Hoxd11.Flag-ChIP-Seq(GSE86088)/Homer

Match Rank:9
Score:0.74
Offset:2
Orientation:reverse strand
Alignment:CCTTTTATAGNC
--TTTTATGGCB
 A T G C G A T C G A C T A G C T C G A T C G A T G T C A C G A T T C G A A T C G T A G C T A G C
A C G T A C G T G C A T C G A T G C A T G A C T G C T A A G C T C A T G C T A G A T G C A G T C

HOXD13(Homeobox)/Chicken-Hoxd13-ChIP-Seq(GSE38910)/Homer

Match Rank:10
Score:0.72
Offset:2
Orientation:reverse strand
Alignment:CCTTTTATAGNC
--TTTTATTRGN
 A T G C G A T C G A C T A G C T C G A T C G A T G T C A C G A T T C G A A T C G T A G C T A G C
A C G T A C G T C G A T A C G T A C G T C G A T C G T A G C A T C A G T C T G A A T C G G C T A