Information for CDX4(Homeobox)/ZebrafishEmbryos-Cdx4.Myc-ChIP-Seq(GSE48254)/Homer (Motif 36)

T A C G T C A G G A T C G T A C T C G A G A C T G C T A G C T A G C T A C G T A G A T C G T C A
Reverse Opposite:
C A G T C A T G G C A T C G A T C G A T C G A T C T G A A G C T C A T G C T A G A G T C A T G C
p-value:1e-2857
log p-value:-6.579e+03
FDR:NA
Information Content per bp:1.556
Number of Target Sequences with motif6896.0
Percentage of Target Sequences with motif30.75%
Number of Background Sequences with motif1568.7
Percentage of Background Sequences with motif5.95%
Average Position of motif in Targets0 +/- 0bp
Average Position of motif in Background0 +/- 0bp
Strand Bias (log2 ratio + to - strand density)0
Multiplicity (# of sites on avg that occur together)1
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

CDX4(Homeobox)/ZebrafishEmbryos-Cdx4.Myc-ChIP-Seq(GSE48254)/Homer

Match Rank:1
Score:1.00
Offset:0
Orientation:forward strand
Alignment:NGYCATAAAWCH
NGYCATAAAWCH
 T A C G T C A G G A T C G T A C T C G A G A C T G C T A G C T A G C T A C G T A G A T C G T C A
T A C G T C A G G A T C G T A C T C G A G A C T G C T A G C T A G C T A C G T A G A T C G T C A

caudal(Homeobox)/Drosophila-Embryos-ChIP-Chip(modEncode)/Homer

Match Rank:2
Score:0.96
Offset:0
Orientation:forward strand
Alignment:NGYCATAAAWCH
GGYCATAAAW--
 T A C G T C A G G A T C G T A C T C G A G A C T G C T A G C T A G C T A C G T A G A T C G T C A
C T A G T C A G G A T C T G A C T C G A A C G T C T G A C G T A T G C A G C T A A C G T A C G T

Hoxd11(Homeobox)/ChickenMSG-Hoxd11.Flag-ChIP-Seq(GSE86088)/Homer

Match Rank:3
Score:0.95
Offset:0
Orientation:forward strand
Alignment:NGYCATAAAWCH
VGCCATAAAA--
 T A C G T C A G G A T C G T A C T C G A G A C T G C T A G C T A G C T A C G T A G A T C G T C A
T C A G T A C G G A T C G T A C T C G A C G A T C T G A C G T A G C T A C G T A A C G T A C G T

Hoxa11(Homeobox)/ChickenMSG-Hoxa11.Flag-ChIP-Seq(GSE86088)/Homer

Match Rank:4
Score:0.95
Offset:0
Orientation:reverse strand
Alignment:NGYCATAAAWCH
KGCCATAAAA--
 T A C G T C A G G A T C G T A C T C G A G A C T G C T A G C T A G C T A C G T A G A T C G T C A
C A T G T A C G G A T C G T A C T C G A C A G T C G T A C G T A G C T A G T C A A C G T A C G T

Abd-B/MA0165.1/Jaspar

Match Rank:5
Score:0.94
Offset:2
Orientation:reverse strand
Alignment:NGYCATAAAWCH
--TCATAAA---
 T A C G T C A G G A T C G T A C T C G A G A C T G C T A G C T A G C T A C G T A G A T C G T C A
A C G T A C G T G A C T G T A C C T G A A C G T C G T A C G T A C G T A A C G T A C G T A C G T

Abd-B/dmmpmm(Noyes_hd)/fly

Match Rank:6
Score:0.93
Offset:1
Orientation:reverse strand
Alignment:NGYCATAAAWCH
-NTCATAAAAC-
 T A C G T C A G G A T C G T A C T C G A G A C T G C T A G C T A G C T A C G T A G A T C G T C A
A C G T C T A G G A C T G T A C C T G A A C G T C G T A C G T A C G T A G C T A T A G C A C G T

abd-B/dmmpmm(Noyes)/fly

Match Rank:7
Score:0.93
Offset:2
Orientation:reverse strand
Alignment:NGYCATAAAWCH
--TCATAAAAC-
 T A C G T C A G G A T C G T A C T C G A G A C T G C T A G C T A G C T A C G T A G A T C G T C A
A C G T A C G T G A C T G T A C C T G A A C G T C G T A C G T A C G T A G C T A T A G C A C G T

Hoxa13(Homeobox)/ChickenMSG-Hoxa13.Flag-ChIP-Seq(GSE86088)/Homer

Match Rank:8
Score:0.93
Offset:1
Orientation:forward strand
Alignment:NGYCATAAAWCH
-CYHATAAAAN-
 T A C G T C A G G A T C G T A C T C G A G A C T G C T A G C T A G C T A C G T A G A T C G T C A
A C G T T A G C G A T C G T A C C T G A G C A T C T G A C G T A T G C A C G T A G A T C A C G T

Cdx2(Homeobox)/mES-Cdx2-ChIP-Seq(GSE14586)/Homer

Match Rank:9
Score:0.93
Offset:1
Orientation:forward strand
Alignment:NGYCATAAAWCH
-GTCATAAAAN-
 T A C G T C A G G A T C G T A C T C G A G A C T G C T A G C T A G C T A C G T A G A T C G T C A
A C G T T C A G A G C T G T A C C G T A A C G T C G T A C G T A C G T A G C T A G A C T A C G T

cad/MA0216.2/Jaspar

Match Rank:10
Score:0.93
Offset:0
Orientation:forward strand
Alignment:NGYCATAAAWCH
GGCCATAAAAA-
 T A C G T C A G G A T C G T A C T C G A G A C T G C T A G C T A G C T A C G T A G A T C G T C A
C T A G T C A G A G T C G T A C C T G A A G C T C G T A C G T A C G T A C G T A G T C A A C G T