Information for STAT5(Stat)/mCD4+-Stat5-ChIP-Seq(GSE12346)/Homer (Motif 357)

C T G A A C G T A C G T A C G T A G T C G A C T C G A T C T G A A C T G C G T A C G T A T C G A
Reverse Opposite:
A G C T A C G T A C G T A G T C G A C T G C T A C T G A A C T G C G T A C G T A T G C A G A C T
p-value:
log p-value:-4.825e+03
FDR:0.000
Information Content per bp:1.717
Number of Target Sequences with motif
Percentage of Target Sequences with motif
Number of Background Sequences with motif
Percentage of Background Sequences with motif
Average Position of motif in Targets0 +/- 0bp
Average Position of motif in Background0 +/- 0bp
Strand Bias (log2 ratio + to - strand density)0
Multiplicity (# of sites on avg that occur together)1
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

STAT5(Stat)/mCD4+-Stat5-ChIP-Seq(GSE12346)/Homer

Match Rank:1
Score:1.00
Offset:0
Orientation:forward strand
Alignment:NTTTCTNAGAAA
NTTTCTNAGAAA
 C T G A A C G T A C G T A C G T A G T C G A C T C G A T C T G A A C T G C G T A C G T A T C G A
C T G A A C G T A C G T A C G T A G T C G A C T C G A T C T G A A C T G C G T A C G T A T C G A

Stat5a::Stat5b/MA0519.1/Jaspar

Match Rank:2
Score:0.94
Offset:0
Orientation:forward strand
Alignment:NTTTCTNAGAAA
ATTTCCAAGAA-
 C T G A A C G T A C G T A C G T A G T C G A C T C G A T C T G A A C T G C G T A C G T A T C G A
C T G A A G C T A C G T A G C T A G T C G A T C G T C A C T G A A C T G G C T A C T G A A C G T

STAT1(Stat)/HelaS3-STAT1-ChIP-Seq(GSE12782)/Homer

Match Rank:3
Score:0.92
Offset:-1
Orientation:forward strand
Alignment:-NTTTCTNAGAAA-
NATTTCCNGGAAAT
 A C G T C T G A A C G T A C G T A C G T A G T C G A C T C G A T C T G A A C T G C G T A C G T A T C G A A C G T
A T G C C T G A G A C T A C G T A C G T G T A C G A T C C G A T C T A G C A T G C G T A C G T A C T G A G A C T

Stat5b/MA1625.1/Jaspar

Match Rank:4
Score:0.91
Offset:-1
Orientation:forward strand
Alignment:-NTTTCTNAGAAA--
CATTTCCCAGAAATC
 A C G T C T G A A C G T A C G T A C G T A G T C G A C T C G A T C T G A A C T G C G T A C G T A T C G A A C G T A C G T
A G T C C T G A G C A T A G C T C G A T G A T C G A T C G T A C C T G A A C T G C T G A T C G A T C G A G C A T T A G C

Stat92E/MA0532.1/Jaspar

Match Rank:5
Score:0.91
Offset:-3
Orientation:forward strand
Alignment:---NTTTCTNAGAAA
CGGAATTCCAGGAAA
 A C G T A C G T A C G T C T G A A C G T A C G T A C G T A G T C G A C T C G A T C T G A A C T G C G T A C G T A T C G A
A G T C T C A G T A C G C T G A C G T A A C G T A G C T A G T C A G T C C T G A C T A G A T C G C G T A C G T A C G T A

Stat4/MA0518.1/Jaspar

Match Rank:6
Score:0.90
Offset:-2
Orientation:reverse strand
Alignment:--NTTTCTNAGAAA
NNNTTTCCTGGAAA
 A C G T A C G T C T G A A C G T A C G T A C G T A G T C G A C T C G A T C T G A A C T G C G T A C G T A T C G A
A G T C A T G C T C G A A G C T A C G T A C G T A G T C G A T C G A C T C T A G A C T G G T C A C G T A T C G A

Stat5a/MA1624.1/Jaspar

Match Rank:7
Score:0.89
Offset:0
Orientation:reverse strand
Alignment:NTTTCTNAGAAA
NNTTCTTGGAAN
 C T G A A C G T A C G T A C G T A G T C G A C T C G A T C T G A A C T G C G T A C G T A T C G A
C T G A C G A T G A C T G C A T T G A C G A C T C G A T C T A G C A T G G C T A C T G A G C T A

STAT4(Stat)/CD4-Stat4-ChIP-Seq(GSE22104)/Homer

Match Rank:8
Score:0.89
Offset:0
Orientation:forward strand
Alignment:NTTTCTNAGAAA
NTTTCCNGGAAA
 C T G A A C G T A C G T A C G T A G T C G A C T C G A T C T G A A C T G C G T A C G T A T C G A
T C A G A G C T A C G T A C G T G T A C G A T C C G T A C T A G C A T G G T C A C G T A T C G A

STAT1/MA0137.3/Jaspar

Match Rank:9
Score:0.88
Offset:1
Orientation:reverse strand
Alignment:NTTTCTNAGAAA
-TTTCCTGGAAA
 C T G A A C G T A C G T A C G T A G T C G A C T C G A T C T G A A C T G C G T A C G T A T C G A
A C G T G A C T A C G T A G C T G T A C A G T C G A C T C T A G A C T G T G C A C T G A T G C A

STAT3/MA0144.2/Jaspar

Match Rank:10
Score:0.88
Offset:1
Orientation:reverse strand
Alignment:NTTTCTNAGAAA
-TTTCCCAGAAN
 C T G A A C G T A C G T A C G T A G T C G A C T C G A T C T G A A C T G C G T A C G T A T C G A
A C G T G A C T A C G T A C G T G A T C A G T C G T A C C T G A C T A G T G C A C G T A T C A G