Information for CArG(MADS)/PUER-Srf-ChIP-Seq(Sullivan_et_al.)/Homer (Motif 351)

A T G C A G T C G C T A C G A T C G T A G C A T G C T A C G A T C T A G C A T G T G A C G T C A
Reverse Opposite:
C A G T A C T G G A T C A G T C G C T A C G A T C G T A G C A T G C T A C G A T C T A G A T C G
p-value:
log p-value:-3.736e+03
FDR:0.000
Information Content per bp:1.682
Number of Target Sequences with motif
Percentage of Target Sequences with motif
Number of Background Sequences with motif
Percentage of Background Sequences with motif
Average Position of motif in Targets0 +/- 0bp
Average Position of motif in Background0 +/- 0bp
Strand Bias (log2 ratio + to - strand density)0
Multiplicity (# of sites on avg that occur together)1
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

CArG(MADS)/PUER-Srf-ChIP-Seq(Sullivan_et_al.)/Homer

Match Rank:1
Score:1.00
Offset:0
Orientation:forward strand
Alignment:CCATATATGGNA
CCATATATGGNA
 A T G C A G T C G C T A C G A T C G T A G C A T G C T A C G A T C T A G C A T G T G A C G T C A
A T G C A G T C G C T A C G A T C G T A G C A T G C T A C G A T C T A G C A T G T G A C G T C A

PB0078.1_Srf_1/Jaspar

Match Rank:2
Score:0.97
Offset:-2
Orientation:forward strand
Alignment:--CCATATATGGNA
TTCCATATATGGAA
 A C G T A C G T A T G C A G T C G C T A C G A T C G T A G C A T G C T A C G A T C T A G C A T G T G A C G T C A
G C A T C G A T G T A C A G T C C G T A C G A T C G T A G C A T C G T A G C A T C T A G C A T G G C A T G T C A

MF0008.1_MADS_class/Jaspar

Match Rank:3
Score:0.89
Offset:0
Orientation:reverse strand
Alignment:CCATATATGGNA
CCATATATGG--
 A T G C A G T C G C T A C G A T C G T A G C A T G C T A C G A T C T A G C A T G T G A C G T C A
G T A C G A T C C G T A G C A T C G T A G C A T G C T A C G A T T C A G C T A G A C G T A C G T

SRF/MA0083.3/Jaspar

Match Rank:4
Score:0.88
Offset:-3
Orientation:reverse strand
Alignment:---CCATATATGGNA-
TGNCCATATATGGTCA
 A C G T A C G T A C G T A T G C A G T C G C T A C G A T C G T A G C A T G C T A C G A T C T A G C A T G T G A C G T C A A C G T
G C A T A C T G G T C A G A T C A T G C C G T A C G A T T G C A A G C T G C T A G C A T T C A G A T C G C A G T T G A C C G T A

SOC1(MADS)/Seedling-SOC1-ChIP-Seq(GSE45846)/Homer

Match Rank:5
Score:0.85
Offset:0
Orientation:reverse strand
Alignment:CCATATATGGNA
CCAWAWWTGGWA
 A T G C A G T C G C T A C G A T C G T A G C A T G C T A C G A T C T A G C A T G T G A C G T C A
T G A C G A T C G C T A C G T A C G T A G C A T G C T A C A G T C T A G C T A G G C T A G T C A

TAGL1(MADS)/Tomato-TAGL1-ChIP-Seq(GSE116581)/Homer

Match Rank:6
Score:0.83
Offset:0
Orientation:forward strand
Alignment:CCATATATGGNA
CCAAAAATRG--
 A T G C A G T C G C T A C G A T C G T A G C A T G C T A C G A T C T A G C A T G T G A C G T C A
G T A C A G T C G C T A C G T A C G T A C G T A C G T A C G A T C T A G A C T G A C G T A C G T

AGL63(MADS)/col-AGL63-DAP-Seq(GSE60143)/Homer

Match Rank:7
Score:0.83
Offset:0
Orientation:reverse strand
Alignment:CCATATATGGNA
CCAWWWTTGGAA
 A T G C A G T C G C T A C G A T C G T A G C A T G C T A C G A T C T A G C A T G T G A C G T C A
G T A C G A T C C G T A C G T A C G A T C G A T G C A T C A G T C T A G T C A G G T C A G C T A

AGL2(MADS)/Arabidopsis thaliana/AthaMap

Match Rank:8
Score:0.81
Offset:-4
Orientation:forward strand
Alignment:----CCATATATGGNA--
CTTACCATATATAGAAAT
 A C G T A C G T A C G T A C G T A T G C A G T C G C T A C G A T C G T A G C A T G C T A C G A T C T A G C A T G T G A C G T C A A C G T A C G T
G A C T C G A T C G A T C G T A A G T C A G T C G C T A C G A T C G T A C G A T C G T A G A C T C T G A A C T G G C T A G C T A C G T A A C G T

SEP1/MA0584.1/Jaspar

Match Rank:9
Score:0.81
Offset:-4
Orientation:forward strand
Alignment:----CCATATATGGNA--
CTTACCATATATAGAAAT
 A C G T A C G T A C G T A C G T A T G C A G T C G C T A C G A T C G T A G C A T G C T A C G A T C T A G C A T G T G A C G T C A A C G T A C G T
G A C T C G A T C G A T C G T A A G T C A G T C G C T A C G A T C G T A C G A T C G T A G A C T C T G A A C T G G C T A G C T A C G T A A C G T

AGL3(MADS)/Arabidopsis thaliana/AthaMap

Match Rank:10
Score:0.80
Offset:-4
Orientation:reverse strand
Alignment:----CCATATATGGNA--
NTTNCTATATATGGAAAN
 A C G T A C G T A C G T A C G T A T G C A G T C G C T A C G A T C G T A G C A T G C T A C G A T C T A G C A T G T G A C G T C A A C G T A C G T
T A G C C A G T G C A T G C A T G T A C G A C T C G T A G C A T C G T A G C A T C G T A G C A T C T A G C T A G C G T A C G T A G T C A A T G C