Information for Cdx2(Homeobox)/mES-Cdx2-ChIP-Seq(GSE14586)/Homer (Motif 35)

T C A G A G C T G T A C C G T A A C G T C G T A C G T A C G T A G C T A G A C T
Reverse Opposite:
C T G A C G A T A C G T A C G T A C G T C G T A A C G T C A T G C T G A A G T C
p-value:
log p-value:-7.212e+03
FDR:0.000
Information Content per bp:1.768
Number of Target Sequences with motif
Percentage of Target Sequences with motif
Number of Background Sequences with motif
Percentage of Background Sequences with motif
Average Position of motif in Targets0 +/- 0bp
Average Position of motif in Background0 +/- 0bp
Strand Bias (log2 ratio + to - strand density)0
Multiplicity (# of sites on avg that occur together)1
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Cdx2(Homeobox)/mES-Cdx2-ChIP-Seq(GSE14586)/Homer

Match Rank:1
Score:1.00
Offset:0
Orientation:forward strand
Alignment:GTCATAAAAN
GTCATAAAAN
 T C A G A G C T G T A C C G T A A C G T C G T A C G T A C G T A G C T A G A C T
T C A G A G C T G T A C C G T A A C G T C G T A C G T A C G T A G C T A G A C T

CDX4/MA1473.1/Jaspar

Match Rank:2
Score:0.97
Offset:-1
Orientation:forward strand
Alignment:-GTCATAAAAN
GGCAATAAAAC
 A C G T T C A G A G C T G T A C C G T A A C G T C G T A C G T A C G T A G C T A G A C T
C A T G T C A G A G T C T G C A C G T A A C G T C G T A C G T A G T C A G T C A A G T C

HOXD9/MA0913.2/Jaspar

Match Rank:3
Score:0.97
Offset:0
Orientation:forward strand
Alignment:GTCATAAAAN
GCAATAAAAC
 T C A G A G C T G T A C C G T A A C G T C G T A C G T A C G T A G C T A G A C T
T C A G A G T C G T C A T C G A C G A T G C T A C G T A C G T A G T C A G A T C

HOXA10/MA0899.1/Jaspar

Match Rank:4
Score:0.97
Offset:-1
Orientation:forward strand
Alignment:-GTCATAAAAN
GGTAATAAAAA
 A C G T T C A G A G C T G T A C C G T A A C G T C G T A C G T A C G T A G C T A G A C T
C T A G T C A G G A C T T G C A T C G A G C A T C G T A C G T A G T C A G T C A G T C A

CDX1/MA0878.2/Jaspar

Match Rank:5
Score:0.96
Offset:-1
Orientation:forward strand
Alignment:-GTCATAAAAN
GGCCATAAAAC
 A C G T T C A G A G C T G T A C C G T A A C G T C G T A C G T A C G T A G C T A G A C T
C A T G C T A G A G T C T G A C C G T A A C G T C T G A C G T A C T G A G T C A A G T C

cad/MA0216.2/Jaspar

Match Rank:6
Score:0.96
Offset:-1
Orientation:forward strand
Alignment:-GTCATAAAAN
GGCCATAAAAA
 A C G T T C A G A G C T G T A C C G T A A C G T C G T A C G T A C G T A G C T A G A C T
C T A G T C A G A G T C G T A C C T G A A G C T C G T A C G T A C G T A C G T A G T C A

caudal(Homeobox)/Drosophila-Embryos-ChIP-Chip(modEncode)/Homer

Match Rank:7
Score:0.95
Offset:-1
Orientation:forward strand
Alignment:-GTCATAAAAN
GGYCATAAAW-
 A C G T T C A G A G C T G T A C C G T A A C G T C G T A C G T A C G T A G C T A G A C T
C T A G T C A G G A T C T G A C T C G A A C G T C T G A C G T A T G C A G C T A A C G T

PH0013.1_Cdx2/Jaspar

Match Rank:8
Score:0.94
Offset:-4
Orientation:forward strand
Alignment:----GTCATAAAAN--
AAAGGTAATAAAATTT
 A C G T A C G T A C G T A C G T T C A G A G C T G T A C C G T A A C G T C G T A C G T A C G T A G C T A G A C T A C G T A C G T
C G T A T C G A T A C G C T A G T C A G A G C T G T C A C T G A C G A T C G T A C G T A G C T A G C T A G A C T C A G T G A C T

Hoxa11(Homeobox)/ChickenMSG-Hoxa11.Flag-ChIP-Seq(GSE86088)/Homer

Match Rank:9
Score:0.93
Offset:-1
Orientation:reverse strand
Alignment:-GTCATAAAAN
KGCCATAAAA-
 A C G T T C A G A G C T G T A C C G T A A C G T C G T A C G T A C G T A G C T A G A C T
C A T G T A C G G A T C G T A C T C G A C A G T C G T A C G T A G C T A G T C A A C G T

Abd-B/dmmpmm(Pollard)/fly

Match Rank:10
Score:0.93
Offset:1
Orientation:forward strand
Alignment:GTCATAAAAN
-TCATAAAA-
 T C A G A G C T G T A C C G T A A C G T C G T A C G T A C G T A G C T A G A C T
A C G T G A C T T A G C C T G A A C G T C G T A C G T A C G T A C G T A A C G T