Information for Sox9(HMG)/Limb-SOX9-ChIP-Seq(GSE73225)/Homer (Motif 343)

C G T A C T A G T C A G T C A G A G T C A T G C A G T C G C A T A G C T A C G T A T C G C G A T
Reverse Opposite:
G C T A T A G C C G T A T C G A C G T A T C A G T A C G T C A G A G T C A G T C G A T C G C A T
p-value:1e-1060
log p-value:-2.442e+03
FDR:NA
Information Content per bp:1.591
Number of Target Sequences with motif2258.0
Percentage of Target Sequences with motif25.01%
Number of Background Sequences with motif1599.7
Percentage of Background Sequences with motif4.06%
Average Position of motif in Targets0 +/- 0bp
Average Position of motif in Background0 +/- 0bp
Strand Bias (log2 ratio + to - strand density)0
Multiplicity (# of sites on avg that occur together)1
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Sox9(HMG)/Limb-SOX9-ChIP-Seq(GSE73225)/Homer

Match Rank:1
Score:1.00
Offset:0
Orientation:forward strand
Alignment:AGGVNCCTTTGT
AGGVNCCTTTGT
 C G T A C T A G T C A G T C A G A G T C A T G C A G T C G C A T A G C T A C G T A T C G C G A T
C G T A C T A G T C A G T C A G A G T C A T G C A G T C G C A T A G C T A C G T A T C G C G A T

Sox10(HMG)/SciaticNerve-Sox3-ChIP-Seq(GSE35132)/Homer

Match Rank:2
Score:0.91
Offset:5
Orientation:forward strand
Alignment:AGGVNCCTTTGT---
-----CCWTTGTYYB
 C G T A C T A G T C A G T C A G A G T C A T G C A G T C G C A T A G C T A C G T A T C G C G A T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A T G C A G T C G C A T A G C T A C G T T C A G C G A T A G C T G A T C A T C G

SOX4/MA0867.2/Jaspar

Match Rank:3
Score:0.89
Offset:4
Orientation:reverse strand
Alignment:AGGVNCCTTTGT--
----NCCTTTGTTC
 C G T A C T A G T C A G T C A G A G T C A T G C A G T C G C A T A G C T A C G T A T C G C G A T A C G T A C G T
A C G T A C G T A C G T A C G T A G T C A G T C G A T C C G A T A G C T A G C T T A C G C G A T A G C T G A T C

Sox3(HMG)/NPC-Sox3-ChIP-Seq(GSE33059)/Homer

Match Rank:4
Score:0.88
Offset:5
Orientation:forward strand
Alignment:AGGVNCCTTTGT-
-----CCWTTGTY
 C G T A C T A G T C A G T C A G A G T C A T G C A G T C G C A T A G C T A C G T A T C G C G A T A C G T
A C G T A C G T A C G T A C G T A C G T A T G C G A T C C G A T A C G T A C G T A C T G C A G T A G C T

SOX10/MA0442.2/Jaspar

Match Rank:5
Score:0.87
Offset:4
Orientation:reverse strand
Alignment:AGGVNCCTTTGT---
----NNCTTTGTTNN
 C G T A C T A G T C A G T C A G A G T C A T G C A G T C G C A T A G C T A C G T A T C G C G A T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A G C T T G A C C G A T C G A T C G A T T C A G C G A T A C G T G A C T G A C T

Sox6(HMG)/Myotubes-Sox6-ChIP-Seq(GSE32627)/Homer

Match Rank:6
Score:0.85
Offset:5
Orientation:forward strand
Alignment:AGGVNCCTTTGT---
-----CCATTGTTNY
 C G T A C T A G T C A G T C A G A G T C A T G C A G T C G C A T A G C T A C G T A T C G C G A T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A T G C G T A C C G T A A G C T G C A T T A C G A G C T A G C T A G T C A G C T

Sox4(HMG)/proB-Sox4-ChIP-Seq(GSE50066)/Homer

Match Rank:7
Score:0.84
Offset:5
Orientation:forward strand
Alignment:AGGVNCCTTTGT---
-----YCTTTGTTCC
 C G T A C T A G T C A G T C A G A G T C A T G C A G T C G C A T A G C T A C G T A T C G C G A T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A G T C A G T C C G A T A C G T A C G T A C T G A C G T A G C T A G T C A G T C

Sox6/MA0515.1/Jaspar

Match Rank:8
Score:0.84
Offset:5
Orientation:forward strand
Alignment:AGGVNCCTTTGT---
-----CCATTGTTTT
 C G T A C T A G T C A G T C A G A G T C A T G C A G T C G C A T A G C T A C G T A T C G C G A T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A G T C A G T C C G T A A C G T A C G T A C T G A C G T A G C T G A C T A G C T

Sox15(HMG)/CPA-Sox15-ChIP-Seq(GSE62909)/Homer

Match Rank:9
Score:0.84
Offset:4
Orientation:reverse strand
Alignment:AGGVNCCTTTGT--
----NCCATTGTTY
 C G T A C T A G T C A G T C A G A G T C A T G C A G T C G C A T A G C T A C G T A T C G C G A T A C G T A C G T
A C G T A C G T A C G T A C G T C T A G A G T C G A T C G C T A C G A T A C G T A T C G A C G T A G C T G A C T

SOX13/MA1120.1/Jaspar

Match Rank:10
Score:0.84
Offset:3
Orientation:reverse strand
Alignment:AGGVNCCTTTGT--
---NNCCATTGTNN
 C G T A C T A G T C A G T C A G A G T C A T G C A G T C G C A T A G C T A C G T A T C G C G A T A C G T A C G T
A C G T A C G T A C G T C G A T A C T G A G T C G A T C C G T A G A C T C G A T T C A G G A C T A G C T G A C T