Information for Sox4(HMG)/proB-Sox4-ChIP-Seq(GSE50066)/Homer (Motif 340)

A G T C A G T C C G A T A C G T A C G T A C T G A C G T A G C T A G T C A G T C
Reverse Opposite:
T C A G T C A G T C G A C G T A A G T C C G T A C G T A C G T A A C T G T C A G
p-value:1e-680
log p-value:-1.566e+03
FDR:NA
Information Content per bp:1.772
Number of Target Sequences with motif1348.0
Percentage of Target Sequences with motif20.64%
Number of Background Sequences with motif1233.8
Percentage of Background Sequences with motif3.00%
Average Position of motif in Targets52.6 +/- 21.3bp
Average Position of motif in Background52.3 +/- 32.0bp
Strand Bias (log2 ratio + to - strand density)-0.1
Multiplicity (# of sites on avg that occur together)1.05
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Sox4(HMG)/proB-Sox4-ChIP-Seq(GSE50066)/Homer

Match Rank:1
Score:1.00
Offset:0
Orientation:forward strand
Alignment:YCTTTGTTCC
YCTTTGTTCC
 A G T C A G T C C G A T A C G T A C G T A C T G A C G T A G C T A G T C A G T C
A G T C A G T C C G A T A C G T A C G T A C T G A C G T A G C T A G T C A G T C

SOX4/MA0867.2/Jaspar

Match Rank:2
Score:0.97
Offset:-1
Orientation:reverse strand
Alignment:-YCTTTGTTCC
NCCTTTGTTC-
 A C G T A G T C A G T C C G A T A C G T A C G T A C T G A C G T A G C T A G T C A G T C
A G T C A G T C G A T C C G A T A G C T A G C T T A C G C G A T A G C T G A T C A C G T

Sox10(HMG)/SciaticNerve-Sox3-ChIP-Seq(GSE35132)/Homer

Match Rank:3
Score:0.96
Offset:0
Orientation:forward strand
Alignment:YCTTTGTTCC
CCWTTGTYYB
 A G T C A G T C C G A T A C G T A C G T A C T G A C G T A G C T A G T C A G T C
A T G C A G T C G C A T A G C T A C G T T C A G C G A T A G C T G A T C A T C G

SOX10/MA0442.2/Jaspar

Match Rank:4
Score:0.94
Offset:-1
Orientation:reverse strand
Alignment:-YCTTTGTTCC
NNCTTTGTTNN
 A C G T A G T C A G T C C G A T A C G T A C G T A C T G A C G T A G C T A G T C A G T C
A C G T A G C T T G A C C G A T C G A T C G A T T C A G C G A T A C G T G A C T G A C T

Sox3/MA0514.1/Jaspar

Match Rank:5
Score:0.93
Offset:0
Orientation:forward strand
Alignment:YCTTTGTTCC
CCTTTGTTTT
 A G T C A G T C C G A T A C G T A C G T A C T G A C G T A G C T A G T C A G T C
A T G C A G T C C G A T A C G T A C G T A T C G A C G T A G C T A G C T A G C T

PB0071.1_Sox4_1/Jaspar

Match Rank:6
Score:0.93
Offset:-4
Orientation:reverse strand
Alignment:----YCTTTGTTCC---
TNNTCCTTTGTTCTNNT
 A C G T A C G T A C G T A C G T A G T C A G T C C G A T A C G T A C G T A C T G A C G T A G C T A G T C A G T C A C G T A C G T A C G T
C G A T C G T A T C A G A G C T A G T C A G T C C G A T A C G T C G A T T A C G C G A T A G C T G A T C G C A T G A C T T G A C C A G T

PB0061.1_Sox11_1/Jaspar

Match Rank:7
Score:0.93
Offset:-4
Orientation:reverse strand
Alignment:----YCTTTGTTCC---
NNNTCCTTTGTTCTNNN
 A C G T A C G T A C G T A C G T A G T C A G T C C G A T A C G T A C G T A C T G A C G T A G C T A G T C A G T C A C G T A C G T A C G T
C G A T C G T A T C A G A G C T A G T C G A T C C G A T A C G T C G A T A C T G C G A T A G C T G A T C G C A T G C A T T G C A C G A T

Sox6/MA0515.1/Jaspar

Match Rank:8
Score:0.92
Offset:0
Orientation:forward strand
Alignment:YCTTTGTTCC
CCATTGTTTT
 A G T C A G T C C G A T A C G T A C G T A C T G A C G T A G C T A G T C A G T C
A G T C A G T C C G T A A C G T A C G T A C T G A C G T A G C T G A C T A G C T

Sox2(HMG)/mES-Sox2-ChIP-Seq(GSE11431)/Homer

Match Rank:9
Score:0.91
Offset:-1
Orientation:forward strand
Alignment:-YCTTTGTTCC
NCCATTGTTC-
 A C G T A G T C A G T C C G A T A C G T A C G T A C T G A C G T A G C T A G T C A G T C
A T G C A G T C G A T C C G T A A C G T A C G T A C T G A C G T A G C T G A T C A C G T

Sox3(HMG)/NPC-Sox3-ChIP-Seq(GSE33059)/Homer

Match Rank:10
Score:0.91
Offset:0
Orientation:forward strand
Alignment:YCTTTGTTCC
CCWTTGTY--
 A G T C A G T C C G A T A C G T A C G T A C T G A C G T A G C T A G T C A G T C
A T G C G A T C C G A T A C G T A C G T A C T G C A G T A G C T A C G T A C G T