Information for Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer (Motif 332)

T A C G A T C G T A G C G A T C A C T G A C G T A G T C A C G T C T A G A T C G
Reverse Opposite:
T A G C A G T C C G T A A C T G C G T A A G T C C T A G A T C G T A G C A T G C
p-value:1e-245
log p-value:-5.663e+02
FDR:NA
Information Content per bp:1.675
Number of Target Sequences with motif2180.0
Percentage of Target Sequences with motif21.81%
Number of Background Sequences with motif4018.8
Percentage of Background Sequences with motif10.30%
Average Position of motif in Targets0 +/- 0bp
Average Position of motif in Background0 +/- 0bp
Strand Bias (log2 ratio + to - strand density)0
Multiplicity (# of sites on avg that occur together)1
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer

Match Rank:1
Score:1.00
Offset:0
Orientation:forward strand
Alignment:VBSYGTCTGG
VBSYGTCTGG
 T A C G A T C G T A G C G A T C A C T G A C G T A G T C A C G T C T A G A T C G
T A C G A T C G T A G C G A T C A C T G A C G T A G T C A C G T C T A G A T C G

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:2
Score:0.98
Offset:2
Orientation:forward strand
Alignment:VBSYGTCTGG
--CTGTCTGG
 T A C G A T C G T A G C G A T C A C T G A C G T A G T C A C G T C T A G A T C G
A C G T A C G T A T G C G A C T A C T G C A G T G A T C A C G T T A C G T A C G

PB0060.1_Smad3_1/Jaspar

Match Rank:3
Score:0.92
Offset:-2
Orientation:reverse strand
Alignment:--VBSYGTCTGG-----
NNTNNTGTCTGGNNTNG
 A C G T A C G T T A C G A T C G T A G C G A T C A C T G A C G T A G T C A C G T C T A G A T C G A C G T A C G T A C G T A C G T A C G T
C A G T A T C G C G A T T C A G T G C A G A C T A C T G C A G T A G T C A C G T T C A G T C A G G C T A G C A T C G A T G A C T C A T G

sma-4/MA0925.1/Jaspar

Match Rank:4
Score:0.90
Offset:1
Orientation:forward strand
Alignment:VBSYGTCTGG--
-AGTGTCTGGAC
 T A C G A T C G T A G C G A T C A C T G A C G T A G T C A C G T C T A G A T C G A C G T A C G T
A C G T C G T A T C A G A C G T A C T G C G A T A G T C A C G T C T A G A C T G T C G A A G T C

Smad4/MA1153.1/Jaspar

Match Rank:5
Score:0.88
Offset:3
Orientation:forward strand
Alignment:VBSYGTCTGG-
---TGTCTAGA
 T A C G A T C G T A G C G A T C A C T G A C G T A G T C A C G T C T A G A T C G A C G T
A C G T A C G T A C G T G A C T A C T G A C G T A G T C A C G T C T G A A C T G T G C A

Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer

Match Rank:6
Score:0.88
Offset:2
Orientation:forward strand
Alignment:VBSYGTCTGG
--TWGTCTGV
 T A C G A T C G T A G C G A T C A C T G A C G T A G T C A C G T C T A G A T C G
A C G T A C G T A G C T G C A T A C T G A C G T A G T C A C G T C T A G T A C G

ARF34/MA1693.1/Jaspar

Match Rank:7
Score:0.84
Offset:-2
Orientation:reverse strand
Alignment:--VBSYGTCTGG-
NNTGCTGTCTGNN
 A C G T A C G T T A C G A T C G T A G C G A T C A C T G A C G T A G T C A C G T C T A G A T C G A C G T
A T G C A G C T A C G T A C T G G T A C G C A T A T C G A G C T A G T C A C G T A T C G G A C T G A C T

ARF27/MA1691.1/Jaspar

Match Rank:8
Score:0.83
Offset:0
Orientation:reverse strand
Alignment:VBSYGTCTGG---
NNATGTCTGCNNN
 T A C G A T C G T A G C G A T C A C T G A C G T A G T C A C G T C T A G A T C G A C G T A C G T A C G T
A G C T A G T C G C T A A C G T C T A G A G C T G A T C C A G T T A C G A G T C G A C T C A T G A T C G

Hand1::Tcf3/MA0092.1/Jaspar

Match Rank:9
Score:0.82
Offset:3
Orientation:forward strand
Alignment:VBSYGTCTGG---
---GGTCTGGCAT
 T A C G A T C G T A G C G A T C A C T G A C G T A G T C A C G T C T A G A T C G A C G T A C G T A C G T
A C G T A C G T A C G T A T C G C T A G G A C T A G T C A C G T A C T G A T C G G T A C C G T A C G A T

ENOX1(RRM)/Homo_sapiens-RNCMPT00149-PBM/HughesRNA

Match Rank:10
Score:0.78
Offset:2
Orientation:reverse strand
Alignment:VBSYGTCTGG
--CTGTCTG-
 T A C G A T C G T A G C G A T C A C T G A C G T A G T C A C G T C T A G A T C G
A C G T A C G T A G T C A G C T C T A G A C G T T G A C A G C T C A T G A C G T