Information for Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer (Motif 331)

A G C T G C A T A C T G A C G T A G T C A C G T C T A G T A C G
Reverse Opposite:
A T G C A G T C C G T A C T A G G T C A A G T C C G T A T C G A
p-value:1e-614
log p-value:-1.414e+03
FDR:NA
Information Content per bp:1.674
Number of Target Sequences with motif7732.0
Percentage of Target Sequences with motif32.22%
Number of Background Sequences with motif4531.7
Percentage of Background Sequences with motif17.98%
Average Position of motif in Targets49.9 +/- 26.6bp
Average Position of motif in Background50.6 +/- 32.6bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.22
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer

Match Rank:1
Score:1.00
Offset:0
Orientation:forward strand
Alignment:TWGTCTGV
TWGTCTGV
 A G C T G C A T A C T G A C G T A G T C A C G T C T A G T A C G
A G C T G C A T A C T G A C G T A G T C A C G T C T A G T A C G

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:2
Score:0.89
Offset:0
Orientation:forward strand
Alignment:TWGTCTGV
CTGTCTGG
 A G C T G C A T A C T G A C G T A G T C A C G T C T A G T A C G
A T G C G A C T A C T G C A G T G A T C A C G T T A C G T A C G

Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer

Match Rank:3
Score:0.88
Offset:-2
Orientation:forward strand
Alignment:--TWGTCTGV
VBSYGTCTGG
 A C G T A C G T A G C T G C A T A C T G A C G T A G T C A C G T C T A G T A C G
T A C G A T C G T A G C G A T C A C T G A C G T A G T C A C G T C T A G A T C G

sma-4/MA0925.1/Jaspar

Match Rank:4
Score:0.86
Offset:-1
Orientation:forward strand
Alignment:-TWGTCTGV--
AGTGTCTGGAC
 A C G T A G C T G C A T A C T G A C G T A G T C A C G T C T A G T A C G A C G T A C G T
C G T A T C A G A C G T A C T G C G A T A G T C A C G T C T A G A C T G T C G A A G T C

PB0060.1_Smad3_1/Jaspar

Match Rank:5
Score:0.84
Offset:-4
Orientation:reverse strand
Alignment:----TWGTCTGV-----
NNTNNTGTCTGGNNTNG
 A C G T A C G T A C G T A C G T A G C T G C A T A C T G A C G T A G T C A C G T C T A G T A C G A C G T A C G T A C G T A C G T A C G T
C A G T A T C G C G A T T C A G T G C A G A C T A C T G C A G T A G T C A C G T T C A G T C A G G C T A G C A T C G A T G A C T C A T G

Smad4/MA1153.1/Jaspar

Match Rank:6
Score:0.83
Offset:1
Orientation:forward strand
Alignment:TWGTCTGV-
-TGTCTAGA
 A G C T G C A T A C T G A C G T A G T C A C G T C T A G T A C G A C G T
A C G T G A C T A C T G A C G T A G T C A C G T C T G A A C T G T G C A

ARF27/MA1691.1/Jaspar

Match Rank:7
Score:0.79
Offset:-2
Orientation:reverse strand
Alignment:--TWGTCTGV---
NNATGTCTGCNNN
 A C G T A C G T A G C T G C A T A C T G A C G T A G T C A C G T C T A G T A C G A C G T A C G T A C G T
A G C T A G T C G C T A A C G T C T A G A G C T G A T C C A G T T A C G A G T C G A C T C A T G A T C G

ARF34/MA1693.1/Jaspar

Match Rank:8
Score:0.78
Offset:-4
Orientation:reverse strand
Alignment:----TWGTCTGV-
NNTGCTGTCTGNN
 A C G T A C G T A C G T A C G T A G C T G C A T A C T G A C G T A G T C A C G T C T A G T A C G A C G T
A T G C A G C T A C G T A C T G G T A C G C A T A T C G A G C T A G T C A C G T A T C G G A C T G A C T

CRZ1(MacIsaac)/Yeast

Match Rank:9
Score:0.76
Offset:0
Orientation:forward strand
Alignment:TWGTCTGV
GAGGCTG-
 A G C T G C A T A C T G A C G T A G T C A C G T C T A G T A C G
A C T G C G A T A C T G A C T G A G T C A C G T A C T G A C G T

Tbox:Smad(T-box,MAD)/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer

Match Rank:10
Score:0.73
Offset:1
Orientation:reverse strand
Alignment:TWGTCTGV-----
-TGTCTGDCACCT
 A G C T G C A T A C T G A C G T A G T C A C G T C T A G T A C G A C G T A C G T A C G T A C G T A C G T
A C G T G C A T A C T G C G A T A G T C A C G T T A C G C A T G A G T C C G T A T A G C G A T C G A C T