Information for Brn2(POU,Homeobox)/NPC-Brn2-ChIP-Seq(GSE35496)/Homer (Motif 33)

G C T A A G C T T A C G G T C A C T G A C G A T C T G A G C A T C A G T A G T C
Reverse Opposite:
T C A G G T C A C G T A A G C T C G T A G A C T C A G T A T G C T C G A C G A T
p-value:1e-625
log p-value:-1.440e+03
FDR:NA
Information Content per bp:1.747
Number of Target Sequences with motif540.0
Percentage of Target Sequences with motif30.79%
Number of Background Sequences with motif415.3
Percentage of Background Sequences with motif0.96%
Average Position of motif in Targets51.9 +/- 16.2bp
Average Position of motif in Background48.9 +/- 41.9bp
Strand Bias (log2 ratio + to - strand density)-0.2
Multiplicity (# of sites on avg that occur together)1.05
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Brn2(POU,Homeobox)/NPC-Brn2-ChIP-Seq(GSE35496)/Homer

Match Rank:1
Score:1.00
Offset:0
Orientation:forward strand
Alignment:ATGAATATTC
ATGAATATTC
 G C T A A G C T T A C G G T C A C T G A C G A T C T G A G C A T C A G T A G T C
G C T A A G C T T A C G G T C A C T G A C G A T C T G A G C A T C A G T A G T C

Pit1(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer

Match Rank:2
Score:0.96
Offset:0
Orientation:forward strand
Alignment:ATGAATATTC
ATGMATATDC
 G C T A A G C T T A C G G T C A C T G A C G A T C T G A G C A T C A G T A G T C
G C T A A C G T C T A G G T A C G C T A G A C T C T G A G C A T C A T G G A T C

unc-86/MA0926.1/Jaspar

Match Rank:3
Score:0.87
Offset:0
Orientation:reverse strand
Alignment:ATGAATATTC
ATGCATAT--
 G C T A A G C T T A C G G T C A C T G A C G A T C T G A G C A T C A G T A G T C
C G T A A C G T A C T G G T A C G T C A A C G T C G T A G A C T A C G T A C G T

OCT:OCT(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer

Match Rank:4
Score:0.84
Offset:-3
Orientation:reverse strand
Alignment:---ATGAATATTC--
CTCATGAATATTCAT
 A C G T A C G T A C G T G C T A A G C T T A C G G T C A C T G A C G A T C T G A G C A T C A G T A G T C A C G T A C G T
T A G C G A C T G A T C C G T A A C G T T C A G G T C A C G T A A C G T C G T A C G A T A C G T A G T C C G T A C G A T

vvl/dmmpmm(Pollard)/fly

Match Rank:5
Score:0.82
Offset:1
Orientation:forward strand
Alignment:ATGAATATTC
-TGCATA---
 G C T A A G C T T A C G G T C A C T G A C G A T C T G A G C A T C A G T A G T C
A C G T A C G T A C T G G T A C C G T A A C G T C T G A A C G T A C G T A C G T

vvl/MA0254.1/Jaspar

Match Rank:6
Score:0.82
Offset:1
Orientation:reverse strand
Alignment:ATGAATATTC
-TGCATA---
 G C T A A G C T T A C G G T C A C T G A C G A T C T G A G C A T C A G T A G T C
A C G T A C G T A C T G G T A C C G T A A C G T C T G A A C G T A C G T A C G T

vvl/dmmpmm(SeSiMCMC)/fly

Match Rank:7
Score:0.82
Offset:1
Orientation:forward strand
Alignment:ATGAATATTC
-TGCATAA--
 G C T A A G C T T A C G G T C A C T G A C G A T C T G A G C A T C A G T A G T C
A C G T A C G T C A T G G T A C C G A T A C G T C G T A C G T A A C G T A C G T

vvl/dmmpmm(Bigfoot)/fly

Match Rank:8
Score:0.82
Offset:1
Orientation:reverse strand
Alignment:ATGAATATTC
-TGAATA---
 G C T A A G C T T A C G G T C A C T G A C G A T C T G A G C A T C A G T A G T C
A C G T A C G T T C A G G T C A C G T A A C G T C G T A A C G T A C G T A C G T

PH0148.1_Pou3f3/Jaspar

Match Rank:9
Score:0.80
Offset:-5
Orientation:forward strand
Alignment:-----ATGAATATTC--
AAAATATGCATAATAAA
 A C G T A C G T A C G T A C G T A C G T G C T A A G C T T A C G G T C A C T G A C G A T C T G A G C A T C A G T A G T C A C G T A C G T
G C T A G C T A C T A G C G T A G A C T G C T A G A C T C A T G G T A C C T G A C G A T C G T A G C T A C A G T C T G A C G T A C G T A

KAN4/MA1028.1/Jaspar

Match Rank:10
Score:0.78
Offset:2
Orientation:forward strand
Alignment:ATGAATATTC
--GAATATTC
 G C T A A G C T T A C G G T C A C T G A C G A T C T G A G C A T C A G T A G T C
A C G T A C G T C A T G C T G A C G T A A G C T T C G A C G A T G A C T G T A C