Information for Six2(Homeobox)/NephronProgenitor-Six2-ChIP-Seq(GSE39837)/Homer (Motif 328)

C T A G C G T A G T C A C G T A A G T C G A T C A G C T C T A G C G T A A C G T G T C A G A T C
Reverse Opposite:
C T A G C A G T T G C A A C G T G A T C T C G A C T A G T C A G A C G T C A G T G C A T G A T C
p-value:1e-2231
log p-value:-5.137e+03
FDR:NA
Information Content per bp:1.570
Number of Target Sequences with motif2764.0
Percentage of Target Sequences with motif54.14%
Number of Background Sequences with motif2001.6
Percentage of Background Sequences with motif4.54%
Average Position of motif in Targets50.7 +/- 23.0bp
Average Position of motif in Background50.2 +/- 29.5bp
Strand Bias (log2 ratio + to - strand density)-0.0
Multiplicity (# of sites on avg that occur together)1.12
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Six2(Homeobox)/NephronProgenitor-Six2-ChIP-Seq(GSE39837)/Homer

Match Rank:1
Score:1.00
Offset:0
Orientation:forward strand
Alignment:GWAAYHTGAKMC
GWAAYHTGAKMC
 C T A G C G T A G T C A C G T A A G T C G A T C A G C T C T A G C G T A A C G T G T C A G A T C
C T A G C G T A G T C A C G T A A G T C G A T C A G C T C T A G C G T A A C G T G T C A G A T C

Six1(Homeobox)/Myoblast-Six1-ChIP-Chip(GSE20150)/Homer

Match Rank:2
Score:0.96
Offset:0
Orientation:reverse strand
Alignment:GWAAYHTGAKMC
GWAAYHTGABMC
 C T A G C G T A G T C A C G T A A G T C G A T C A G C T C T A G C G T A A C G T G T C A G A T C
A C T G C G A T G T C A C G T A A G T C G T A C G C A T A C T G C G T A A C G T G T A C G A T C

Six4(Homeobox)/MCF7-SIX4-ChIP-Seq(Encode)/Homer

Match Rank:3
Score:0.93
Offset:-1
Orientation:forward strand
Alignment:-GWAAYHTGAKMC--
TGWAAYCTGABACCB
 A C G T C T A G C G T A G T C A C G T A A G T C G A T C A G C T C T A G C G T A A C G T G T C A G A T C A C G T A C G T
C A G T A C T G C G T A G T C A C G T A A G C T G A T C A G C T A C T G C G T A A G T C G T C A A G T C A G T C A T C G

SIX1/MA1118.1/Jaspar

Match Rank:4
Score:0.88
Offset:0
Orientation:forward strand
Alignment:GWAAYHTGAKMC
GTAACCTGATA-
 C T A G C G T A G T C A C G T A A G T C G A T C A G C T C T A G C G T A A C G T G T C A G A T C
C A T G C G A T G C T A C G T A G A T C G T A C G C A T C T A G C G T A A C G T G T C A A C G T

SIX2/MA1119.1/Jaspar

Match Rank:5
Score:0.87
Offset:-4
Orientation:forward strand
Alignment:----GWAAYHTGAKMC
AACTGAAACCTGATAC
 A C G T A C G T A C G T A C G T C T A G C G T A G T C A C G T A A G T C G A T C A G C T C T A G C G T A A C G T G T C A G A T C
G C T A G C T A T G A C C G A T C A T G G C T A G T C A C T G A G A T C G T A C G C A T C T A G C G T A A C G T G T C A G A T C

PB0034.1_Irf4_1/Jaspar

Match Rank:6
Score:0.63
Offset:-6
Orientation:forward strand
Alignment:------GWAAYHTGAKMC
CGTATCGAAACCAAA---
 A C G T A C G T A C G T A C G T A C G T A C G T C T A G C G T A G T C A C G T A A G T C G A T C A G C T C T A G C G T A A C G T G T C A G A T C
T G A C C T A G C G A T C G T A G A C T A G T C C T A G T C G A C G T A C G T A T A G C G A T C C T G A G T C A C G T A A C G T A C G T A C G T

IRF4(IRF)/GM12878-IRF4-ChIP-Seq(GSE32465)/Homer

Match Rank:7
Score:0.63
Offset:-3
Orientation:forward strand
Alignment:---GWAAYHTGAKMC
ACTGAAACCA-----
 A C G T A C G T A C G T C T A G C G T A G T C A C G T A A G T C G A T C A G C T C T A G C G T A A C G T G T C A G A T C
G C T A T A G C A G C T A T C G G T C A C G T A G C T A A T G C G A T C C T G A A C G T A C G T A C G T A C G T A C G T

STE12(MacIsaac)/Yeast

Match Rank:8
Score:0.60
Offset:-1
Orientation:forward strand
Alignment:-GWAAYHTGAKMC
TGAAACA------
 A C G T C T A G C G T A G T C A C G T A A G T C G A T C A G C T C T A G C G T A A C G T G T C A G A T C
A G C T T C A G C T G A T C G A C T G A G A T C C T G A A C G T A C G T A C G T A C G T A C G T A C G T

RBP9(RRM)/Drosophila_melanogaster-RNCMPT00132-PBM/HughesRNA

Match Rank:9
Score:0.60
Offset:2
Orientation:reverse strand
Alignment:GWAAYHTGAKMC
--AACCAAA---
 C T A G C G T A G T C A C G T A A G T C G A T C A G C T C T A G C G T A A C G T G T C A G A T C
A C G T A C G T C G T A C G T A G T A C G A T C G C T A C G T A C G T A A C G T A C G T A C G T

PB0169.1_Sox15_2/Jaspar

Match Rank:10
Score:0.59
Offset:-6
Orientation:forward strand
Alignment:------GWAAYHTGAKMC
TTGAATGAAATTCGA---
 A C G T A C G T A C G T A C G T A C G T A C G T C T A G C G T A G T C A C G T A A G T C G A T C A G C T C T A G C G T A A C G T G T C A G A T C
A C G T A C G T T C A G C T G A G T C A A G C T A C T G C G T A G T C A C T G A C A G T G A C T G A T C T A C G T C G A A C G T A C G T A C G T