Information for Brn1(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer (Motif 32)

G A C T C G T A A C G T A C T G A G T C C G T A C T G A C G T A C A G T A C G T G T C A T C A G
Reverse Opposite:
A G T C C A G T T G C A G T C A A C G T A G C T C G A T T C A G G T A C C G T A A C G T C T G A
p-value:1e-638
log p-value:-1.470e+03
FDR:NA
Information Content per bp:1.652
Number of Target Sequences with motif840.0
Percentage of Target Sequences with motif19.46%
Number of Background Sequences with motif614.1
Percentage of Background Sequences with motif1.48%
Average Position of motif in Targets51.5 +/- 24.0bp
Average Position of motif in Background48.2 +/- 38.1bp
Strand Bias (log2 ratio + to - strand density)0.1
Multiplicity (# of sites on avg that occur together)1.14
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Brn1(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer

Match Rank:1
Score:1.00
Offset:0
Orientation:forward strand
Alignment:TATGCWAATBAV
TATGCWAATBAV
 G A C T C G T A A C G T A C T G A G T C C G T A C T G A C G T A C A G T A C G T G T C A T C A G
G A C T C G T A A C G T A C T G A G T C C G T A C T G A C G T A C A G T A C G T G T C A T C A G

Oct6(POU,Homeobox)/NPC-Pou3f1-ChIP-Seq(GSE35496)/Homer

Match Rank:2
Score:0.98
Offset:0
Orientation:forward strand
Alignment:TATGCWAATBAV
WATGCAAATGAG
 G A C T C G T A A C G T A C T G A G T C C G T A C T G A C G T A C A G T A C G T G T C A T C A G
G C A T C G T A C G A T A C T G A G T C G C T A C T G A C G T A C A G T A C T G C G T A T C A G

POU5F1B/MA0792.1/Jaspar

Match Rank:3
Score:0.96
Offset:0
Orientation:forward strand
Alignment:TATGCWAATBAV
TATGCAAAT---
 G A C T C G T A A C G T A C T G A G T C C G T A C T G A C G T A C A G T A C G T G T C A T C A G
G A C T C G T A A G C T C A T G A G T C C G T A C G T A C G T A C G A T A C G T A C G T A C G T

POU3F1/MA0786.1/Jaspar

Match Rank:4
Score:0.95
Offset:-1
Orientation:forward strand
Alignment:-TATGCWAATBAV
TTATGCAAATTA-
 A C G T G A C T C G T A A C G T A C T G A G T C C G T A C T G A C G T A C A G T A C G T G T C A T C A G
C G A T G C A T C T G A G A C T C A T G A G T C C G T A C G T A C G T A C G A T C A G T G C T A A C G T

POU3F4/MA0789.1/Jaspar

Match Rank:5
Score:0.95
Offset:0
Orientation:forward strand
Alignment:TATGCWAATBAV
TATGCAAAT---
 G A C T C G T A A C G T A C T G A G T C C G T A C T G A C G T A C A G T A C G T G T C A T C A G
G C A T C T G A G A C T C A T G A G T C C G T A G C T A C G T A C G A T A C G T A C G T A C G T

POU3F2/MA0787.1/Jaspar

Match Rank:6
Score:0.95
Offset:-1
Orientation:forward strand
Alignment:-TATGCWAATBAV
TTATGCAAATTA-
 A C G T G A C T C G T A A C G T A C T G A G T C C G T A C T G A C G T A C A G T A C G T G T C A T C A G
C G A T G C A T T C G A G A C T C A T G A G T C G C T A C G T A G C T A C G A T A C G T G C T A A C G T

PH0144.1_Pou2f2/Jaspar

Match Rank:7
Score:0.95
Offset:-3
Orientation:forward strand
Alignment:---TATGCWAATBAV-
TTGTATGCAAATTAGA
 A C G T A C G T A C G T G A C T C G T A A C G T A C T G A G T C C G T A C T G A C G T A C A G T A C G T G T C A T C A G A C G T
A G C T G C A T C A T G G C A T C G T A A G C T C A T G A G T C C G T A C G T A C G T A C G A T C A G T G C T A C T A G T G C A

PH0145.1_Pou2f3/Jaspar

Match Rank:8
Score:0.94
Offset:-3
Orientation:forward strand
Alignment:---TATGCWAATBAV-
TTGTATGCAAATTAGA
 A C G T A C G T A C G T G A C T C G T A A C G T A C T G A G T C C G T A C T G A C G T A C A G T A C G T G T C A T C A G A C G T
A C G T G C A T C A T G G A C T C G T A A G C T A C T G A G T C C G T A C G T A C G T A C A G T A C G T G T C A C T A G T G C A

POU2F1/MA0785.1/Jaspar

Match Rank:9
Score:0.94
Offset:-2
Orientation:forward strand
Alignment:--TATGCWAATBAV
AATATGCAAATT--
 A C G T A C G T G A C T C G T A A C G T A C T G A G T C C G T A C T G A C G T A C A G T A C G T G T C A T C A G
G C T A C G T A G A C T C G T A A G C T C A T G A G T C C G T A C T G A C G T A C G A T C A G T A C G T A C G T

Oct4(POU,Homeobox)/mES-Oct4-ChIP-Seq(GSE11431)/Homer

Match Rank:10
Score:0.94
Offset:-1
Orientation:reverse strand
Alignment:-TATGCWAATBAV
TTATGCAAAT---
 A C G T G A C T C G T A A C G T A C T G A G T C C G T A C T G A C G T A C A G T A C G T G T C A T C A G
C G A T G C A T C T G A A C G T A C T G A G T C C G T A C T G A C G T A C G A T A C G T A C G T A C G T