Information for RORgt(NR)/EL4-RORgt.Flag-ChIP-Seq(GSE56019)/Homer (Motif 318)

G C T A C G T A A G T C A C G T T C G A T A C G A C T G A G C T A G T C T C G A
Reverse Opposite:
A G C T C T A G T C G A A G T C A T G C A G C T T G C A T C A G G C A T C G A T
p-value:1e-303
log p-value:-6.999e+02
FDR:NA
Information Content per bp:1.754
Number of Target Sequences with motif431.0
Percentage of Target Sequences with motif5.51%
Number of Background Sequences with motif186.4
Percentage of Background Sequences with motif0.45%
Average Position of motif in Targets51.0 +/- 24.8bp
Average Position of motif in Background48.3 +/- 26.1bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.04
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

RORgt(NR)/EL4-RORgt.Flag-ChIP-Seq(GSE56019)/Homer

Match Rank:1
Score:1.00
Offset:0
Orientation:forward strand
Alignment:AAYTAGGTCA
AAYTAGGTCA
 G C T A C G T A A G T C A C G T T C G A T A C G A C T G A G C T A G T C T C G A
G C T A C G T A A G T C A C G T T C G A T A C G A C T G A G C T A G T C T C G A

RORgt(NR)/EL4-RORgt.Flag-ChIP-Seq(GSE56019)/Homer

Match Rank:2
Score:1.00
Offset:0
Orientation:forward strand
Alignment:AAYTAGGTCA
AAYTAGGTCA
 G C T A C G T A A G T C A C G T T C G A T A C G A C T G A G C T A G T C T C G A
G C T A C G T A A G T C A C G T T C G A T A C G A C T G A G C T A G T C T C G A

RORg(NR)/Liver-Rorc-ChIP-Seq(GSE101115)/Homer

Match Rank:3
Score:0.98
Offset:-1
Orientation:forward strand
Alignment:-AAYTAGGTCA-
WAABTAGGTCAV
 A C G T G C T A C G T A A G T C A C G T T C G A T A C G A C T G A G C T A G T C T C G A A C G T
C G T A C G T A C G T A A G T C A G C T C T G A A C T G C T A G A G C T A G T C C G T A T C A G

RORC/MA1151.1/Jaspar

Match Rank:4
Score:0.97
Offset:-2
Orientation:forward strand
Alignment:--AAYTAGGTCA
ATAAGTAGGTCA
 A C G T A C G T G C T A C G T A A G T C A C G T T C G A T A C G A C T G A G C T A G T C T C G A
C T G A C G A T G C T A C G T A A C T G A C G T T C G A C A T G C T A G A C G T A G T C C T G A

RORB/MA1150.1/Jaspar

Match Rank:5
Score:0.97
Offset:0
Orientation:forward strand
Alignment:AAYTAGGTCA-
AATTAGGTCAC
 G C T A C G T A A G T C A C G T T C G A T A C G A C T G A G C T A G T C T C G A A C G T
C G T A G C T A C G A T A C G T C T G A A C T G C T A G A G C T G A T C C T G A G A T C

RORa(NR)/Liver-Rora-ChIP-Seq(GSE101115)/Homer

Match Rank:6
Score:0.97
Offset:-1
Orientation:forward strand
Alignment:-AAYTAGGTCA----
AAWCTAGGTCARDNN
 A C G T G C T A C G T A A G T C A C G T T C G A T A C G A C T G A G C T A G T C T C G A A C G T A C G T A C G T A C G T
C G T A C G T A C G T A A G T C A G C T C T G A A C T G A C T G A G C T A G T C C G T A C T A G C T A G C T A G T G C A

RORA(var.2)/MA0072.1/Jaspar

Match Rank:7
Score:0.97
Offset:-3
Orientation:forward strand
Alignment:---AAYTAGGTCA-
TATAAGTAGGTCAA
 A C G T A C G T A C G T G C T A C G T A A G T C A C G T T C G A T A C G A C T G A G C T A G T C T C G A A C G T
C G A T C G T A C G A T G T C A C G T A A T C G A C G T C T G A A C T G A C T G A C G T A G T C C G T A T C G A

RORA/MA0071.1/Jaspar

Match Rank:8
Score:0.91
Offset:0
Orientation:forward strand
Alignment:AAYTAGGTCA
ATCAAGGTCA
 G C T A C G T A A G T C A C G T T C G A T A C G A C T G A G C T A G T C T C G A
C G T A G C A T T G A C C G T A C T G A A C T G A C T G A C G T A G T C C G T A

MF0004.1_Nuclear_Receptor_class/Jaspar

Match Rank:9
Score:0.83
Offset:4
Orientation:forward strand
Alignment:AAYTAGGTCA
----AGGTCA
 G C T A C G T A A G T C A C G T T C G A T A C G A C T G A G C T A G T C T C G A
A C G T A C G T A C G T A C G T C T G A C A T G C A T G C G A T G T A C T G C A

Hr46/dmmpmm(Pollard)/fly

Match Rank:10
Score:0.83
Offset:0
Orientation:forward strand
Alignment:AAYTAGGTCA
AATTGGGTCA
 G C T A C G T A A G T C A C G T T C G A T A C G A C T G A G C T A G T C T C G A
C G T A C G T A A C G T A C G T A C T G A C T G A C T G A C G T A G T C C G T A