Information for RORg(NR)/Liver-Rorc-ChIP-Seq(GSE101115)/Homer (Motif 317)

C G T A C G T A C G T A A G T C A G C T C T G A A C T G C T A G A G C T A G T C C G T A T C A G
Reverse Opposite:
A G T C A C G T T C A G T C G A A G T C A G T C A G C T C T G A T C A G C G A T G C A T G C A T
p-value:1e-193
log p-value:-4.446e+02
FDR:NA
Information Content per bp:1.693
Number of Target Sequences with motif167.0
Percentage of Target Sequences with motif13.70%
Number of Background Sequences with motif190.7
Percentage of Background Sequences with motif0.40%
Average Position of motif in Targets0 +/- 0bp
Average Position of motif in Background0 +/- 0bp
Strand Bias (log2 ratio + to - strand density)0
Multiplicity (# of sites on avg that occur together)1
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

RORg(NR)/Liver-Rorc-ChIP-Seq(GSE101115)/Homer

Match Rank:1
Score:1.00
Offset:0
Orientation:forward strand
Alignment:WAABTAGGTCAV
WAABTAGGTCAV
 C G T A C G T A C G T A A G T C A G C T C T G A A C T G C T A G A G C T A G T C C G T A T C A G
C G T A C G T A C G T A A G T C A G C T C T G A A C T G C T A G A G C T A G T C C G T A T C A G

RORgt(NR)/EL4-RORgt.Flag-ChIP-Seq(GSE56019)/Homer

Match Rank:2
Score:0.98
Offset:1
Orientation:forward strand
Alignment:WAABTAGGTCAV
-AAYTAGGTCA-
 C G T A C G T A C G T A A G T C A G C T C T G A A C T G C T A G A G C T A G T C C G T A T C A G
A C G T G C T A C G T A A G T C A C G T T C G A T A C G A C T G A G C T A G T C T C G A A C G T

RORgt(NR)/EL4-RORgt.Flag-ChIP-Seq(GSE56019)/Homer

Match Rank:3
Score:0.98
Offset:1
Orientation:forward strand
Alignment:WAABTAGGTCAV
-AAYTAGGTCA-
 C G T A C G T A C G T A A G T C A G C T C T G A A C T G C T A G A G C T A G T C C G T A T C A G
A C G T G C T A C G T A A G T C A C G T T C G A T A C G A C T G A G C T A G T C T C G A A C G T

RORC/MA1151.1/Jaspar

Match Rank:4
Score:0.97
Offset:-1
Orientation:forward strand
Alignment:-WAABTAGGTCAV
ATAAGTAGGTCA-
 A C G T C G T A C G T A C G T A A G T C A G C T C T G A A C T G C T A G A G C T A G T C C G T A T C A G
C T G A C G A T G C T A C G T A A C T G A C G T T C G A C A T G C T A G A C G T A G T C C T G A A C G T

RORA(var.2)/MA0072.1/Jaspar

Match Rank:5
Score:0.97
Offset:-2
Orientation:forward strand
Alignment:--WAABTAGGTCAV
TATAAGTAGGTCAA
 A C G T A C G T C G T A C G T A C G T A A G T C A G C T C T G A A C T G C T A G A G C T A G T C C G T A T C A G
C G A T C G T A C G A T G T C A C G T A A T C G A C G T C T G A A C T G A C T G A C G T A G T C C G T A T C G A

RORa(NR)/Liver-Rora-ChIP-Seq(GSE101115)/Homer

Match Rank:6
Score:0.97
Offset:0
Orientation:forward strand
Alignment:WAABTAGGTCAV---
AAWCTAGGTCARDNN
 C G T A C G T A C G T A A G T C A G C T C T G A A C T G C T A G A G C T A G T C C G T A T C A G A C G T A C G T A C G T
C G T A C G T A C G T A A G T C A G C T C T G A A C T G A C T G A G C T A G T C C G T A C T A G C T A G C T A G T G C A

RORB/MA1150.1/Jaspar

Match Rank:7
Score:0.95
Offset:1
Orientation:forward strand
Alignment:WAABTAGGTCAV
-AATTAGGTCAC
 C G T A C G T A C G T A A G T C A G C T C T G A A C T G C T A G A G C T A G T C C G T A T C A G
A C G T C G T A G C T A C G A T A C G T C T G A A C T G C T A G A G C T G A T C C T G A G A T C

RORA/MA0071.1/Jaspar

Match Rank:8
Score:0.87
Offset:1
Orientation:forward strand
Alignment:WAABTAGGTCAV
-ATCAAGGTCA-
 C G T A C G T A C G T A A G T C A G C T C T G A A C T G C T A G A G C T A G T C C G T A T C A G
A C G T C G T A G C A T T G A C C G T A C T G A A C T G A C T G A C G T A G T C C G T A A C G T

Hr46/dmmpmm(Pollard)/fly

Match Rank:9
Score:0.84
Offset:1
Orientation:forward strand
Alignment:WAABTAGGTCAV
-AATTGGGTCA-
 C G T A C G T A C G T A A G T C A G C T C T G A A C T G C T A G A G C T A G T C C G T A T C A G
A C G T C G T A C G T A A C G T A C G T A C T G A C T G A C T G A C G T A G T C C G T A A C G T

MF0004.1_Nuclear_Receptor_class/Jaspar

Match Rank:10
Score:0.82
Offset:5
Orientation:forward strand
Alignment:WAABTAGGTCAV
-----AGGTCA-
 C G T A C G T A C G T A A G T C A G C T C T G A A C T G C T A G A G C T A G T C C G T A T C A G
A C G T A C G T A C G T A C G T A C G T C T G A C A T G C A T G C G A T G T A C T G C A A C G T