Information for RORa(NR)/Liver-Rora-ChIP-Seq(GSE101115)/Homer (Motif 316)

C G T A C G T A C G T A A G T C A G C T C T G A A C T G A C T G A G C T A G T C C G T A C T A G C T A G C T A G T G C A
Reverse Opposite:
A C G T G A T C G A C T G A T C A C G T A C T G T C G A A G T C A G T C A G C T C T G A T C A G C G A T C G A T G C A T
p-value:1e-217
log p-value:-5.007e+02
FDR:NA
Information Content per bp:1.624
Number of Target Sequences with motif310.0
Percentage of Target Sequences with motif6.51%
Number of Background Sequences with motif241.6
Percentage of Background Sequences with motif0.54%
Average Position of motif in Targets0 +/- 0bp
Average Position of motif in Background0 +/- 0bp
Strand Bias (log2 ratio + to - strand density)0
Multiplicity (# of sites on avg that occur together)1
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

RORa(NR)/Liver-Rora-ChIP-Seq(GSE101115)/Homer

Match Rank:1
Score:1.00
Offset:0
Orientation:forward strand
Alignment:AAWCTAGGTCARDNN
AAWCTAGGTCARDNN
 C G T A C G T A C G T A A G T C A G C T C T G A A C T G A C T G A G C T A G T C C G T A C T A G C T A G C T A G T G C A
C G T A C G T A C G T A A G T C A G C T C T G A A C T G A C T G A G C T A G T C C G T A C T A G C T A G C T A G T G C A

RORgt(NR)/EL4-RORgt.Flag-ChIP-Seq(GSE56019)/Homer

Match Rank:2
Score:0.97
Offset:1
Orientation:forward strand
Alignment:AAWCTAGGTCARDNN
-AAYTAGGTCA----
 C G T A C G T A C G T A A G T C A G C T C T G A A C T G A C T G A G C T A G T C C G T A C T A G C T A G C T A G T G C A
A C G T G C T A C G T A A G T C A C G T T C G A T A C G A C T G A G C T A G T C T C G A A C G T A C G T A C G T A C G T

RORgt(NR)/EL4-RORgt.Flag-ChIP-Seq(GSE56019)/Homer

Match Rank:3
Score:0.97
Offset:1
Orientation:forward strand
Alignment:AAWCTAGGTCARDNN
-AAYTAGGTCA----
 C G T A C G T A C G T A A G T C A G C T C T G A A C T G A C T G A G C T A G T C C G T A C T A G C T A G C T A G T G C A
A C G T G C T A C G T A A G T C A C G T T C G A T A C G A C T G A G C T A G T C T C G A A C G T A C G T A C G T A C G T

RORg(NR)/Liver-Rorc-ChIP-Seq(GSE101115)/Homer

Match Rank:4
Score:0.97
Offset:0
Orientation:forward strand
Alignment:AAWCTAGGTCARDNN
WAABTAGGTCAV---
 C G T A C G T A C G T A A G T C A G C T C T G A A C T G A C T G A G C T A G T C C G T A C T A G C T A G C T A G T G C A
C G T A C G T A C G T A A G T C A G C T C T G A A C T G C T A G A G C T A G T C C G T A T C A G A C G T A C G T A C G T

RORC/MA1151.1/Jaspar

Match Rank:5
Score:0.96
Offset:-1
Orientation:forward strand
Alignment:-AAWCTAGGTCARDNN
ATAAGTAGGTCA----
 A C G T C G T A C G T A C G T A A G T C A G C T C T G A A C T G A C T G A G C T A G T C C G T A C T A G C T A G C T A G T G C A
C T G A C G A T G C T A C G T A A C T G A C G T T C G A C A T G C T A G A C G T A G T C C T G A A C G T A C G T A C G T A C G T

RORA(var.2)/MA0072.1/Jaspar

Match Rank:6
Score:0.95
Offset:-2
Orientation:forward strand
Alignment:--AAWCTAGGTCARDNN
TATAAGTAGGTCAA---
 A C G T A C G T C G T A C G T A C G T A A G T C A G C T C T G A A C T G A C T G A G C T A G T C C G T A C T A G C T A G C T A G T G C A
C G A T C G T A C G A T G T C A C G T A A T C G A C G T C T G A A C T G A C T G A C G T A G T C C G T A T C G A A C G T A C G T A C G T

RORB/MA1150.1/Jaspar

Match Rank:7
Score:0.94
Offset:1
Orientation:forward strand
Alignment:AAWCTAGGTCARDNN
-AATTAGGTCAC---
 C G T A C G T A C G T A A G T C A G C T C T G A A C T G A C T G A G C T A G T C C G T A C T A G C T A G C T A G T G C A
A C G T C G T A G C T A C G A T A C G T C T G A A C T G C T A G A G C T G A T C C T G A G A T C A C G T A C G T A C G T

RORA/MA0071.1/Jaspar

Match Rank:8
Score:0.90
Offset:1
Orientation:forward strand
Alignment:AAWCTAGGTCARDNN
-ATCAAGGTCA----
 C G T A C G T A C G T A A G T C A G C T C T G A A C T G A C T G A G C T A G T C C G T A C T A G C T A G C T A G T G C A
A C G T C G T A G C A T T G A C C G T A C T G A A C T G A C T G A C G T A G T C C G T A A C G T A C G T A C G T A C G T

MF0004.1_Nuclear_Receptor_class/Jaspar

Match Rank:9
Score:0.83
Offset:5
Orientation:forward strand
Alignment:AAWCTAGGTCARDNN
-----AGGTCA----
 C G T A C G T A C G T A A G T C A G C T C T G A A C T G A C T G A G C T A G T C C G T A C T A G C T A G C T A G T G C A
A C G T A C G T A C G T A C G T A C G T C T G A C A T G C A T G C G A T G T A C T G C A A C G T A C G T A C G T A C G T

kni/MA0451.1/Jaspar

Match Rank:10
Score:0.80
Offset:0
Orientation:forward strand
Alignment:AAWCTAGGTCARDNN
AAACTAGAGCAC---
 C G T A C G T A C G T A A G T C A G C T C T G A A C T G A C T G A G C T A G T C C G T A C T A G C T A G C T A G T G C A
C G T A G T C A C G T A A G T C A G C T C T G A A C T G C T G A A C T G A G T C C T G A T A G C A C G T A C G T A C G T