Information for Ronin(THAP)/ES-Thap11-ChIP-Seq(GSE51522)/Homer (Motif 315)

T C A G C G T A A G T C A G C T C G T A A G T C C T G A C G T A A G T C G C A T A G T C A G T C A G T C C T G A A C T G T G C A T C G A C A T G A T C G G A T C
Reverse Opposite:
C A T G T A G C G T A C A G C T A C G T T G A C A G C T C T A G A C T G C T A G C G T A T C A G G C A T A G C T A C T G C G A T C T G A A C T G A C G T A G T C
p-value:1e-928
log p-value:-2.139e+03
FDR:NA
Information Content per bp:1.728
Number of Target Sequences with motif715.0
Percentage of Target Sequences with motif20.69%
Number of Background Sequences with motif187.2
Percentage of Background Sequences with motif0.44%
Average Position of motif in Targets0 +/- 0bp
Average Position of motif in Background0 +/- 0bp
Strand Bias (log2 ratio + to - strand density)0
Multiplicity (# of sites on avg that occur together)1
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Ronin(THAP)/ES-Thap11-ChIP-Seq(GSE51522)/Homer

Match Rank:1
Score:1.00
Offset:0
Orientation:forward strand
Alignment:RACTACAACTCCCAGVAKGC
RACTACAACTCCCAGVAKGC
 T C A G C G T A A G T C A G C T C G T A A G T C C T G A C G T A A G T C G C A T A G T C A G T C A G T C C T G A A C T G T G C A T C G A C A T G A T C G G A T C
T C A G C G T A A G T C A G C T C G T A A G T C C T G A C G T A A G T C G C A T A G T C A G T C A G T C C T G A A C T G T G C A T C G A C A T G A T C G G A T C

GFY-Staf(?,Zf)/Promoter/Homer

Match Rank:2
Score:0.98
Offset:0
Orientation:forward strand
Alignment:RACTACAACTCCCAGVAKGC
AACTACAATTCCCAGAATGC
 T C A G C G T A A G T C A G C T C G T A A G T C C T G A C G T A A G T C G C A T A G T C A G T C A G T C C T G A A C T G T G C A T C G A C A T G A T C G G A T C
T C G A C G T A A G T C A G C T C G T A A G T C T C G A G C T A G A C T C G A T A G T C A G T C A G T C C T G A T C A G T G C A T C G A C A G T A T C G A G T C

THAP11/MA1573.1/Jaspar

Match Rank:3
Score:0.91
Offset:-2
Orientation:forward strand
Alignment:--RACTACAACTCCCAGVAKGC
AGGACTACATTTCCCAGCA---
 A C G T A C G T T C A G C G T A A G T C A G C T C G T A A G T C C T G A C G T A A G T C G C A T A G T C A G T C A G T C C T G A A C T G T G C A T C G A C A T G A T C G G A T C
T C G A T C A G C T A G T G C A A G T C G A C T G T C A A G T C T C G A G C A T A G C T A G C T G A T C A G T C A G T C C T G A C T A G T G A C T C G A A C G T A C G T A C G T

GFY(?)/Promoter/Homer

Match Rank:4
Score:0.85
Offset:1
Orientation:forward strand
Alignment:RACTACAACTCCCAGVAKGC
-ACTACAATTCCC-------
 T C A G C G T A A G T C A G C T C G T A A G T C C T G A C G T A A G T C G C A T A G T C A G T C A G T C C T G A A C T G T G C A T C G A C A T G A T C G G A T C
A C G T T G C A T A G C G A C T T G C A T G A C T G C A C G T A A G C T A G C T A G T C A G T C G T A C A C G T A C G T A C G T A C G T A C G T A C G T A C G T

ZNF143|STAF(Zf)/CUTLL-ZNF143-ChIP-Seq(GSE29600)/Homer

Match Rank:5
Score:0.72
Offset:6
Orientation:forward strand
Alignment:RACTACAACTCCCAGVAKGC-
------ATTTCCCAGVAKSCY
 T C A G C G T A A G T C A G C T C G T A A G T C C T G A C G T A A G T C G C A T A G T C A G T C A G T C C T G A A C T G T G C A T C G A C A T G A T C G G A T C A C G T
A C G T A C G T A C G T A C G T A C G T A C G T T G C A G C A T A G C T G C A T A G T C A G T C A G T C C T G A A C T G T C G A T C G A C A G T A T C G A G T C G A T C

Rbm42(RRM)/Xenopus_tropicalis-RNCMPT00282-PBM/HughesRNA

Match Rank:6
Score:0.62
Offset:-1
Orientation:forward strand
Alignment:-RACTACAACTCCCAGVAKGC
CAACTACN-------------
 A C G T T C A G C G T A A G T C A G C T C G T A A G T C C T G A C G T A A G T C G C A T A G T C A G T C A G T C C T G A A C T G T G C A T C G A C A T G A T C G G A T C
A T G C C G T A C G T A A G T C A C G T C G T A A G T C C T A G A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

MSI(RRM)/Drosophila_melanogaster-RNCMPT00040-PBM/HughesRNA

Match Rank:7
Score:0.55
Offset:0
Orientation:reverse strand
Alignment:RACTACAACTCCCAGVAKGC
AACTACT-------------
 T C A G C G T A A G T C A G C T C G T A A G T C C T G A C G T A A G T C G C A T A G T C A G T C A G T C C T G A A C T G T G C A T C G A C A T G A T C G G A T C
G C T A G T C A A G T C A C G T C G T A A G T C C G A T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

Stat5b/MA1625.1/Jaspar

Match Rank:8
Score:0.54
Offset:5
Orientation:forward strand
Alignment:RACTACAACTCCCAGVAKGC
-----CATTTCCCAGAAATC
 T C A G C G T A A G T C A G C T C G T A A G T C C T G A C G T A A G T C G C A T A G T C A G T C A G T C C T G A A C T G T G C A T C G A C A T G A T C G G A T C
A C G T A C G T A C G T A C G T A C G T A G T C C T G A G C A T A G C T C G A T G A T C G A T C G T A C C T G A A C T G C T G A T C G A T C G A G C A T T A G C

ZNF143/MA0088.2/Jaspar

Match Rank:9
Score:0.53
Offset:8
Orientation:forward strand
Alignment:RACTACAACTCCCAGVAKGC----
--------TACCCACAATGCATTG
 T C A G C G T A A G T C A G C T C G T A A G T C C T G A C G T A A G T C G C A T A G T C A G T C A G T C C T G A A C T G T G C A T C G A C A T G A T C G G A T C A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A G C T C G T A G T A C G T A C A G T C C T G A A G T C T C G A C T G A C G A T T C A G A G T C G T C A G A C T G A C T C T A G

PUM(PUF)/Drosophila_melanogaster-RNCMPT00105-PBM/HughesRNA

Match Rank:10
Score:0.53
Offset:0
Orientation:reverse strand
Alignment:RACTACAACTCCCAGVAKGC
AATTACA-------------
 T C A G C G T A A G T C A G C T C G T A A G T C C T G A C G T A A G T C G C A T A G T C A G T C A G T C C T G A A C T G T G C A T C G A C A T G A T C G G A T C
C G T A G C T A C G A T A C G T C G T A A G T C C G T A A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T