Information for Rfx6(HTH)/Min6b1-Rfx6.HA-ChIP-Seq(GSE62844)/Homer (Motif 314)

C A G T T C A G A G C T G A C T A C G T A G T C G A T C G A C T C T G A A C T G G A T C C G T A C T G A A G T C G T A C
Reverse Opposite:
C A T G A C T G A G C T C G A T C T A G A G T C A G C T C T G A C T A G A C T G T G C A C T G A T C G A A G T C G T C A
p-value:1e-1293
log p-value:-2.979e+03
FDR:NA
Information Content per bp:1.718
Number of Target Sequences with motif4746.0
Percentage of Target Sequences with motif23.44%
Number of Background Sequences with motif1916.2
Percentage of Background Sequences with motif6.53%
Average Position of motif in Targets50.1 +/- 24.8bp
Average Position of motif in Background51.2 +/- 28.5bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.12
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Rfx6(HTH)/Min6b1-Rfx6.HA-ChIP-Seq(GSE62844)/Homer

Match Rank:1
Score:1.00
Offset:0
Orientation:forward strand
Alignment:TGTTKCCTAGCAACM
TGTTKCCTAGCAACM
 C A G T T C A G A G C T G A C T A C G T A G T C G A T C G A C T C T G A A C T G G A T C C G T A C T G A A G T C G T A C
C A G T T C A G A G C T G A C T A C G T A G T C G A T C G A C T C T G A A C T G G A T C C G T A C T G A A G T C G T A C

Rfx5(HTH)/GM12878-Rfx5-ChIP-Seq(GSE31477)/Homer

Match Rank:2
Score:0.85
Offset:4
Orientation:forward strand
Alignment:TGTTKCCTAGCAACM-
----SCCTAGCAACAG
 C A G T T C A G A G C T G A C T A C G T A G T C G A T C G A C T C T G A A C T G G A T C C G T A C T G A A G T C G T A C A C G T
A C G T A C G T A C G T A C G T A T G C A G T C G T A C A G C T T C G A C T A G G A T C C T G A G T C A A G T C G C T A T C A G

PB0054.1_Rfx3_1/Jaspar

Match Rank:3
Score:0.82
Offset:-2
Orientation:forward strand
Alignment:--TGTTKCCTAGCAACM------
TGTGACCCTTAGCAACCGATTAA
 A C G T A C G T C A G T T C A G A G C T G A C T A C G T A G T C G A T C G A C T C T G A A C T G G A T C C G T A C T G A A G T C G T A C A C G T A C G T A C G T A C G T A C G T A C G T
G A C T C A T G A G C T A T C G G T C A G A T C T G A C A T G C G A C T A G C T T C G A C T A G G A T C C T G A C G T A A G T C T A G C T C A G C G T A G C A T G C A T G C T A G C T A

PB0056.1_Rfxdc2_1/Jaspar

Match Rank:4
Score:0.81
Offset:2
Orientation:forward strand
Alignment:TGTTKCCTAGCAACM--
--CCGCATAGCAACGGA
 C A G T T C A G A G C T G A C T A C G T A G T C G A T C G A C T C T G A A C T G G A T C C G T A C T G A A G T C G T A C A C G T A C G T
A C G T A C G T A G T C A G T C T A C G A T G C G C T A G A C T T C G A C T A G G A T C C T G A T C G A A G T C T A C G T C A G C T G A

PB0055.1_Rfx4_1/Jaspar

Match Rank:5
Score:0.81
Offset:2
Orientation:forward strand
Alignment:TGTTKCCTAGCAACM--
--TACCATAGCAACGGT
 C A G T T C A G A G C T G A C T A C G T A G T C G A T C G A C T C T G A A C T G G A T C C G T A C T G A A G T C G T A C A C G T A C G T
A C G T A C G T A G C T G T C A T A G C A T G C G T C A A G C T T C G A C T A G G A T C C T G A C T G A A G T C T A C G T C A G C G A T

RFX1/MA0509.2/Jaspar

Match Rank:6
Score:0.79
Offset:2
Orientation:reverse strand
Alignment:TGTTKCCTAGCAACM-
--TNCCATAGCAACNN
 C A G T T C A G A G C T G A C T A C G T A G T C G A T C G A C T C T G A A C T G G A T C C G T A C T G A A G T C G T A C A C G T
A C G T A C G T G A C T C A T G A G T C G A T C G T C A G A C T T C G A C T A G G A T C C T G A T C G A G A T C G T C A T C A G

RFX1/MA0365.1/Jaspar

Match Rank:7
Score:0.76
Offset:7
Orientation:reverse strand
Alignment:TGTTKCCTAGCAACM
-------TAGCAACC
 C A G T T C A G A G C T G A C T A C G T A G T C G A T C G A C T C T G A A C T G G A T C C G T A C T G A A G T C G T A C
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T C T A G A C T G A G T C C G T A C G T A A G T C T A G C

RFX3/MA0798.2/Jaspar

Match Rank:8
Score:0.74
Offset:2
Orientation:reverse strand
Alignment:TGTTKCCTAGCAACM-
--TNCCATAGCAACNN
 C A G T T C A G A G C T G A C T A C G T A G T C G A T C G A C T C T G A A C T G G A T C C G T A C T G A A G T C G T A C A C G T
A C G T A C G T G A C T C A T G A G T C G A T C G T C A A G C T C T G A C T A G G A T C C T G A T C G A G A T C T G A C T C A G

RFX7/MA1554.1/Jaspar

Match Rank:9
Score:0.70
Offset:6
Orientation:reverse strand
Alignment:TGTTKCCTAGCAACM
------NTAGCAACG
 C A G T T C A G A G C T G A C T A C G T A G T C G A T C G A C T C T G A A C T G G A T C C G T A C T G A A G T C G T A C
A C G T A C G T A C G T A C G T A C G T A C G T C T G A G A C T T C G A T A C G G A T C C T G A C T G A A T G C T A C G

Stat4/MA0518.1/Jaspar

Match Rank:10
Score:0.64
Offset:-1
Orientation:reverse strand
Alignment:-TGTTKCCTAGCAACM
NNNTTTCCTGGAAA--
 A C G T C A G T T C A G A G C T G A C T A C G T A G T C G A T C G A C T C T G A A C T G G A T C C G T A C T G A A G T C G T A C
A G T C A T G C T C G A A G C T A C G T A C G T A G T C G A T C G A C T C T A G A C T G G T C A C G T A T C G A A C G T A C G T