Information for Rfx5(HTH)/GM12878-Rfx5-ChIP-Seq(GSE31477)/Homer (Motif 313)

A T G C A G T C G T A C A G C T T C G A C T A G G A T C C T G A G T C A A G T C G C T A T C A G
Reverse Opposite:
A G T C C G A T A C T G A C G T G A C T C T A G A G T C A G C T C T G A C A T G C T A G T A C G
p-value:1e-393
log p-value:-9.059e+02
FDR:NA
Information Content per bp:1.661
Number of Target Sequences with motif354.0
Percentage of Target Sequences with motif39.03%
Number of Background Sequences with motif650.3
Percentage of Background Sequences with motif1.44%
Average Position of motif in Targets51.1 +/- 17.2bp
Average Position of motif in Background49.5 +/- 34.5bp
Strand Bias (log2 ratio + to - strand density)0.3
Multiplicity (# of sites on avg that occur together)1.10
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Rfx5(HTH)/GM12878-Rfx5-ChIP-Seq(GSE31477)/Homer

Match Rank:1
Score:1.00
Offset:0
Orientation:forward strand
Alignment:SCCTAGCAACAG
SCCTAGCAACAG
 A T G C A G T C G T A C A G C T T C G A C T A G G A T C C T G A G T C A A G T C G C T A T C A G
A T G C A G T C G T A C A G C T T C G A C T A G G A T C C T G A G T C A A G T C G C T A T C A G

RFX1/MA0509.2/Jaspar

Match Rank:2
Score:0.93
Offset:-2
Orientation:reverse strand
Alignment:--SCCTAGCAACAG
TNCCATAGCAACNN
 A C G T A C G T A T G C A G T C G T A C A G C T T C G A C T A G G A T C C T G A G T C A A G T C G C T A T C A G
G A C T C A T G A G T C G A T C G T C A G A C T T C G A C T A G G A T C C T G A T C G A G A T C G T C A T C A G

PB0055.1_Rfx4_1/Jaspar

Match Rank:3
Score:0.93
Offset:-2
Orientation:forward strand
Alignment:--SCCTAGCAACAG-
TACCATAGCAACGGT
 A C G T A C G T A T G C A G T C G T A C A G C T T C G A C T A G G A T C C T G A G T C A A G T C G C T A T C A G A C G T
A G C T G T C A T A G C A T G C G T C A A G C T T C G A C T A G G A T C C T G A C T G A A G T C T A C G T C A G C G A T

PB0056.1_Rfxdc2_1/Jaspar

Match Rank:4
Score:0.92
Offset:-2
Orientation:forward strand
Alignment:--SCCTAGCAACAG-
CCGCATAGCAACGGA
 A C G T A C G T A T G C A G T C G T A C A G C T T C G A C T A G G A T C C T G A G T C A A G T C G C T A T C A G A C G T
A G T C A G T C T A C G A T G C G C T A G A C T T C G A C T A G G A T C C T G A T C G A A G T C T A C G T C A G C T G A

PB0054.1_Rfx3_1/Jaspar

Match Rank:5
Score:0.91
Offset:-6
Orientation:forward strand
Alignment:------SCCTAGCAACAG-----
TGTGACCCTTAGCAACCGATTAA
 A C G T A C G T A C G T A C G T A C G T A C G T A T G C A G T C G T A C A G C T T C G A C T A G G A T C C T G A G T C A A G T C G C T A T C A G A C G T A C G T A C G T A C G T A C G T
G A C T C A T G A G C T A T C G G T C A G A T C T G A C A T G C G A C T A G C T T C G A C T A G G A T C C T G A C G T A A G T C T A G C T C A G C G T A G C A T G C A T G C T A G C T A

RFX3/MA0798.2/Jaspar

Match Rank:6
Score:0.90
Offset:-2
Orientation:reverse strand
Alignment:--SCCTAGCAACAG
TNCCATAGCAACNN
 A C G T A C G T A T G C A G T C G T A C A G C T T C G A C T A G G A T C C T G A G T C A A G T C G C T A T C A G
G A C T C A T G A G T C G A T C G T C A A G C T C T G A C T A G G A T C C T G A T C G A G A T C T G A C T C A G

RFX1/MA0365.1/Jaspar

Match Rank:7
Score:0.89
Offset:3
Orientation:reverse strand
Alignment:SCCTAGCAACAG
---TAGCAACC-
 A T G C A G T C G T A C A G C T T C G A C T A G G A T C C T G A G T C A A G T C G C T A T C A G
A C G T A C G T A C G T A C G T C T A G A C T G A G T C C G T A C G T A A G T C T A G C A C G T

Rfx6(HTH)/Min6b1-Rfx6.HA-ChIP-Seq(GSE62844)/Homer

Match Rank:8
Score:0.85
Offset:-4
Orientation:forward strand
Alignment:----SCCTAGCAACAG
TGTTKCCTAGCAACM-
 A C G T A C G T A C G T A C G T A T G C A G T C G T A C A G C T T C G A C T A G G A T C C T G A G T C A A G T C G C T A T C A G
C A G T T C A G A G C T G A C T A C G T A G T C G A T C G A C T C T G A A C T G G A T C C G T A C T G A A G T C G T A C A C G T

RFX7/MA1554.1/Jaspar

Match Rank:9
Score:0.84
Offset:2
Orientation:reverse strand
Alignment:SCCTAGCAACAG
--NTAGCAACG-
 A T G C A G T C G T A C A G C T T C G A C T A G G A T C C T G A G T C A A G T C G C T A T C A G
A C G T A C G T C T G A G A C T T C G A T A C G G A T C C T G A C T G A A T G C T A C G A C G T

Rfx1(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer

Match Rank:10
Score:0.77
Offset:-3
Orientation:reverse strand
Alignment:---SCCTAGCAACAG
TTGCCATGGCAACN-
 A C G T A C G T A C G T A T G C A G T C G T A C A G C T T C G A C T A G G A T C C T G A G T C A A G T C G C T A T C A G
A G C T G A C T C A T G A G T C A G T C G C T A C G A T C T A G T C A G G T A C C T G A T C G A A G T C T G A C A C G T