Information for RARa(NR)/K562-RARa-ChIP-Seq(Encode)/Homer (Motif 304)

A G C T A G C T C A T G C T G A G T A C A G T C A G C T A G C T C A G T C T A G
Reverse Opposite:
G A T C G T C A T C G A T C G A C T A G C A T G A G C T G T A C T C G A T C G A
p-value:1e-2401
log p-value:-5.530e+03
FDR:NA
Information Content per bp:1.563
Number of Target Sequences with motif12777.0
Percentage of Target Sequences with motif37.55%
Number of Background Sequences with motif4771.2
Percentage of Background Sequences with motif14.43%
Average Position of motif in Targets0 +/- 0bp
Average Position of motif in Background0 +/- 0bp
Strand Bias (log2 ratio + to - strand density)0
Multiplicity (# of sites on avg that occur together)1
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

RARa(NR)/K562-RARa-ChIP-Seq(Encode)/Homer

Match Rank:1
Score:1.00
Offset:0
Orientation:forward strand
Alignment:TTGAMCTTTG
TTGAMCTTTG
 A G C T A G C T C A T G C T G A G T A C A G T C A G C T A G C T C A G T C T A G
A G C T A G C T C A T G C T G A G T A C A G T C A G C T A G C T C A G T C T A G

Erra(NR)/HepG2-Erra-ChIP-Seq(GSE31477)/Homer

Match Rank:2
Score:0.91
Offset:0
Orientation:reverse strand
Alignment:TTGAMCTTTG
CTGACCTTTG
 A G C T A G C T C A T G C T G A G T A C A G T C A G C T A G C T C A G T C T A G
A T G C A C G T T A C G T G C A G T A C A G T C G A C T A G C T A C G T T C A G

EAR2(NR)/K562-NR2F6-ChIP-Seq(Encode)/Homer

Match Rank:3
Score:0.90
Offset:1
Orientation:reverse strand
Alignment:TTGAMCTTTG---
-TGACCYYTGVYN
 A G C T A G C T C A T G C T G A G T A C A G T C A G C T A G C T C A G T C T A G A C G T A C G T A C G T
A C G T A C G T T C A G T C G A G T A C A G T C A G C T A G T C C G A T C A T G T G C A A G T C A G T C

NR2F2/MA1111.1/Jaspar

Match Rank:4
Score:0.90
Offset:-1
Orientation:reverse strand
Alignment:-TTGAMCTTTG
NNTGACCTTTN
 A C G T A G C T A G C T C A T G C T G A G T A C A G T C A G C T A G C T C A G T C T A G
G A C T G A C T G A C T C T A G T G C A G A T C G T A C G A C T G C A T C A G T C T A G

COUP-TFII(NR)/K562-NR2F1-ChIP-Seq(Encode)/Homer

Match Rank:5
Score:0.90
Offset:1
Orientation:reverse strand
Alignment:TTGAMCTTTG---
-TGACCTYTGVMC
 A G C T A G C T C A T G C T G A G T A C A G T C A G C T A G C T C A G T C T A G A C G T A C G T A C G T
A C G T G C A T T C A G T G C A G T A C G T A C A G C T A G C T G C A T C A T G T C G A T G A C A T G C

THRb(NR)/Liver-NR1A2-ChIP-Seq(GSE52613)/Homer

Match Rank:6
Score:0.90
Offset:1
Orientation:reverse strand
Alignment:TTGAMCTTTG
-TGACCTYA-
 A G C T A G C T C A T G C T G A G T A C A G T C A G C T A G C T C A G T C T A G
A C G T A G C T C T A G G C T A T G A C A T G C A G C T A G T C C G T A A C G T

NR2F1/MA0017.2/Jaspar

Match Rank:7
Score:0.89
Offset:-3
Orientation:reverse strand
Alignment:---TTGAMCTTTG
CNNTTGACCTTTG
 A C G T A C G T A C G T A G C T A G C T C A T G C T G A G T A C A G T C A G C T A G C T C A G T C T A G
G A T C A G T C A G T C C A G T A G C T A C T G C G T A A G T C A T G C A G C T G A C T C G A T C A T G

PB0049.1_Nr2f2_1/Jaspar

Match Rank:8
Score:0.89
Offset:-3
Orientation:reverse strand
Alignment:---TTGAMCTTTG---
NNNNTGACCTTTNNNN
 A C G T A C G T A C G T A G C T A G C T C A T G C T G A G T A C A G T C A G C T A G C T C A G T C T A G A C G T A C G T A C G T
A G T C C G A T A T G C C A T G A G C T T C A G G T C A G T A C G T A C A G C T A G C T G C A T C A T G T C G A C A T G G T C A

NR2C2(var.2)/MA1536.1/Jaspar

Match Rank:9
Score:0.89
Offset:0
Orientation:reverse strand
Alignment:TTGAMCTTTG
NTGACCTN--
 A G C T A G C T C A T G C T G A G T A C A G T C A G C T A G C T C A G T C T A G
C G T A A G C T T C A G G T C A G T A C T G A C A G C T A G T C A C G T A C G T

MF0004.1_Nuclear_Receptor_class/Jaspar

Match Rank:10
Score:0.88
Offset:1
Orientation:reverse strand
Alignment:TTGAMCTTTG
-TGACCT---
 A G C T A G C T C A T G C T G A G T A C A G T C A G C T A G C T C A G T C T A G
A C G T A C G T C A T G G C T A G T A C G T A C G A C T A C G T A C G T A C G T