Information for PSE(SNAPc)/K562-mStart-Seq/Homer (Motif 299)

C G T A C T G A T A C G G A C T G A T C T C G A G A T C G A T C T G C A G A C T T C G A C G T A A T C G A G T C C G A T C G T A C G T A G T C A C G T A C T A G
Reverse Opposite:
G A T C G C A T C A G T C G A T G C A T G C T A T C A G T A G C G C A T A G C T C T G A A C G T C T A G C T A G A G C T C T A G C T G A A T G C G A C T G C A T
p-value:1e-891
log p-value:-2.052e+03
FDR:NA
Information Content per bp:1.491
Number of Target Sequences with motif599.0
Percentage of Target Sequences with motif6.21%
Number of Background Sequences with motif31.8
Percentage of Background Sequences with motif0.08%
Average Position of motif in Targets0 +/- 0bp
Average Position of motif in Background0 +/- 0bp
Strand Bias (log2 ratio + to - strand density)0
Multiplicity (# of sites on avg that occur together)1
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PSE(SNAPc)/K562-mStart-Seq/Homer

Match Rank:1
Score:1.00
Offset:0
Orientation:forward strand
Alignment:WAVTCACCMTAASYDAAAAG
WAVTCACCMTAASYDAAAAG
 C G T A C T G A T A C G G A C T G A T C T C G A G A T C G A T C T G C A G A C T T C G A C G T A A T C G A G T C C G A T C G T A C G T A G T C A C G T A C T A G
C G T A C T G A T A C G G A C T G A T C T C G A G A T C G A T C T G C A G A C T T C G A C G T A A T C G A G T C C G A T C G T A C G T A G T C A C G T A C T A G

ASHR1(ND)/col-ASHR1-DAP-Seq(GSE60143)/Homer

Match Rank:2
Score:0.62
Offset:2
Orientation:reverse strand
Alignment:WAVTCACCMTAASYDAAAAG
--NTCACCAN----------
 C G T A C T G A T A C G G A C T G A T C T C G A G A T C G A T C T G C A G A C T T C G A C G T A A T C G A G T C C G A T C G T A C G T A G T C A C G T A C T A G
A C G T A C G T T C A G C G A T G T A C C G T A T A G C G T A C G C T A G A C T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

TBP3/MA1355.1/Jaspar

Match Rank:3
Score:0.60
Offset:-1
Orientation:forward strand
Alignment:-WAVTCACCMTAASYDAAAAG
AATTAAACCCTAATT------
 A C G T C G T A C T G A T A C G G A C T G A T C T C G A G A T C G A T C T G C A G A C T T C G A C G T A A T C G A G T C C G A T C G T A C G T A G T C A C G T A C T A G
G C T A G C T A G C A T C G A T C G T A G C T A C T G A G T A C A G T C A G T C A C G T C G T A C T G A G C A T G A C T A C G T A C G T A C G T A C G T A C G T A C G T

HNRNPA1L2(RRM)/Homo_sapiens-RNCMPT00023-PBM/HughesRNA

Match Rank:4
Score:0.59
Offset:5
Orientation:reverse strand
Alignment:WAVTCACCMTAASYDAAAAG
-----TCCCTAA--------
 C G T A C T G A T A C G G A C T G A T C T C G A G A T C G A T C T G C A G A C T T C G A C G T A A T C G A G T C C G A T C G T A C G T A G T C A C G T A C T A G
A C G T A C G T A C G T A C G T A C G T C G A T G T A C A G T C A G T C A C G T C G T A G T C A A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

TBF1/MA0403.1/Jaspar

Match Rank:5
Score:0.59
Offset:4
Orientation:forward strand
Alignment:WAVTCACCMTAASYDAAAAG
----AACCCTAA--------
 C G T A C T G A T A C G G A C T G A T C T C G A G A T C G A T C T G C A G A C T T C G A C G T A A T C G A G T C C G A T C G T A C G T A G T C A C G T A C T A G
A C G T A C G T A C G T A C G T C G T A T C G A G T A C A G T C A G T C A G C T T C G A T C G A A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

AGL55/MA1202.1/Jaspar

Match Rank:6
Score:0.59
Offset:3
Orientation:forward strand
Alignment:WAVTCACCMTAASYDAAAAG
---TCACCA-----------
 C G T A C T G A T A C G G A C T G A T C T C G A G A T C G A T C T G C A G A C T T C G A C G T A A T C G A G T C C G A T C G T A C G T A G T C A C G T A C T A G
A C G T A C G T A C G T A G C T A G T C C G T A A G T C A G T C C G T A A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

P0510F09.23/MA1030.1/Jaspar

Match Rank:7
Score:0.59
Offset:4
Orientation:forward strand
Alignment:WAVTCACCMTAASYDAAAAG
----AACCCTAGAT------
 C G T A C T G A T A C G G A C T G A T C T C G A G A T C G A T C T G C A G A C T T C G A C G T A A T C G A G T C C G A T C G T A C G T A G T C A C G T A C T A G
A C G T A C G T A C G T A C G T G C T A C T G A G T A C G T A C T G A C G C A T C T G A T C A G G T C A G A C T A C G T A C G T A C G T A C G T A C G T A C G T

MUB(KH)/Drosophila_melanogaster-RNCMPT00137-PBM/HughesRNA

Match Rank:8
Score:0.58
Offset:4
Orientation:forward strand
Alignment:WAVTCACCMTAASYDAAAAG
----AACCCTA---------
 C G T A C T G A T A C G G A C T G A T C T C G A G A T C G A T C T G C A G A C T T C G A C G T A A T C G A G T C C G A T C G T A C G T A G T C A C G T A C T A G
A C G T A C G T A C G T A C G T C G T A G T C A G T A C A G T C A T G C A C G T C G T A A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

AT1G72740(MYBrelated)/colamp-AT1G72740-DAP-Seq(GSE60143)/Homer

Match Rank:9
Score:0.58
Offset:1
Orientation:forward strand
Alignment:WAVTCACCMTAASYDAAAAG
-NNWWAMCCTAAHWNN----
 C G T A C T G A T A C G G A C T G A T C T C G A G A T C G A T C T G C A G A C T T C G A C G T A A T C G A G T C C G A T C G T A C G T A G T C A C G T A C T A G
A C G T C G T A C G A T C G A T C G T A C T G A G T C A A G T C A G T C A C G T C G T A C T G A G C A T C G A T C G A T G C T A A C G T A C G T A C G T A C G T

AT1G72740/MA1353.1/Jaspar

Match Rank:10
Score:0.56
Offset:1
Orientation:reverse strand
Alignment:WAVTCACCMTAASYDAAAAG
-CNAAACCCTAAATCN----
 C G T A C T G A T A C G G A C T G A T C T C G A G A T C G A T C T G C A G A C T T C G A C G T A A T C G A G T C C G A T C G T A C G T A G T C A C G T A C T A G
A C G T T G A C C G A T C G T A C G T A C T G A T G A C G T A C A T G C G A C T C G T A C T G A G C T A G A C T G A T C G A T C A C G T A C G T A C G T A C G T