Information for PRDM9(Zf)/Testis-DMC1-ChIP-Seq(GSE35498)/Homer (Motif 296)

C T G A C G A T C T A G T C A G G A T C C T G A T C A G G A T C C T G A A C T G A G T C G C T A A C G T A G T C G C A T
Reverse Opposite:
C G T A T C A G T G C A C G A T C T A G T G A C G A C T C T A G A G T C G A C T C T A G A G T C G A T C G C T A G A C T
p-value:1e-3319
log p-value:-7.643e+03
FDR:NA
Information Content per bp:1.602
Number of Target Sequences with motif5467.0
Percentage of Target Sequences with motif53.74%
Number of Background Sequences with motif2907.0
Percentage of Background Sequences with motif7.31%
Average Position of motif in Targets0 +/- 0bp
Average Position of motif in Background0 +/- 0bp
Strand Bias (log2 ratio + to - strand density)0
Multiplicity (# of sites on avg that occur together)1
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PRDM9(Zf)/Testis-DMC1-ChIP-Seq(GSE35498)/Homer

Match Rank:1
Score:1.00
Offset:0
Orientation:forward strand
Alignment:ADGGYAGYAGCATCT
ADGGYAGYAGCATCT
 C T G A C G A T C T A G T C A G G A T C C T G A T C A G G A T C C T G A A C T G A G T C G C T A A C G T A G T C G C A T
C T G A C G A T C T A G T C A G G A T C C T G A T C A G G A T C C T G A A C T G A G T C G C T A A C G T A G T C G C A T

SeqBias: GCW-triplet

Match Rank:2
Score:0.71
Offset:3
Orientation:forward strand
Alignment:ADGGYAGYAGCATCT
---GCAGCAGCAGCA
 C T G A C G A T C T A G T C A G G A T C C T G A T C A G G A T C C T G A A C T G A G T C G C T A A C G T A G T C G C A T
A C G T A C G T A C G T A C T G A G T C C G A T A C T G A G T C C G A T A C T G A G T C C G A T A C T G A G T C C G A T

Ascl2/MA0816.1/Jaspar

Match Rank:3
Score:0.64
Offset:5
Orientation:forward strand
Alignment:ADGGYAGYAGCATCT
-----AGCAGCTGCT
 C T G A C G A T C T A G T C A G G A T C C T G A T C A G G A T C C T G A A C T G A G T C G C T A A C G T A G T C G C A T
A C G T A C G T A C G T A C G T A C G T T C G A T C A G G T A C C G T A A T C G T G A C C G A T A C T G A G T C G A C T

odd/dmmpmm(Noyes)/fly

Match Rank:4
Score:0.63
Offset:2
Orientation:forward strand
Alignment:ADGGYAGYAGCATCT
--AACAGTAGCA---
 C T G A C G A T C T A G T C A G G A T C C T G A T C A G G A T C C T G A A C T G A G T C G C T A A C G T A G T C G C A T
A C G T A C G T G T C A T G C A A G T C T C G A C T A G C A G T C G T A A C T G A G T C T G C A A C G T A C G T A C G T

Adf1/dmmpmm(Bergman)/fly

Match Rank:5
Score:0.63
Offset:2
Orientation:reverse strand
Alignment:ADGGYAGYAGCATCT
--NACAGAAGCAGC-
 C T G A C G A T C T A G T C A G G A T C C T G A T C A G G A T C C T G A A C T G A G T C G C T A A C G T A G T C G C A T
A C G T A C G T C A G T C T A G A G T C C T A G A C T G G T A C C T A G A C T G A T C G C G T A A C T G A G T C A C G T

EBNA1(EBV-virus)/Raji-EBNA1-ChIP-Seq(GSE30709)/Homer

Match Rank:6
Score:0.61
Offset:2
Orientation:forward strand
Alignment:ADGGYAGYAGCATCT-------
--GGYAGCAYDTGCTDCCCNNN
 C T G A C G A T C T A G T C A G G A T C C T G A T C A G G A T C C T G A A C T G A G T C G C T A A C G T A G T C G C A T A C G T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C T G C T A G G A T C C G T A C T A G A G T C T G C A G A C T C G T A A C G T T C A G A G T C A C G T C T G A A G T C A G T C G A T C C G T A T C A G T A C G

OSR1/MA1542.1/Jaspar

Match Rank:7
Score:0.61
Offset:2
Orientation:reverse strand
Alignment:ADGGYAGYAGCATCT
--NACAGTAGCN---
 C T G A C G A T C T A G T C A G G A T C C T G A T C A G G A T C C T G A A C T G A G T C G C T A A C G T A G T C G C A T
A C G T A C G T G T C A T C G A G A T C T C G A A C T G C G A T C T G A C T A G A G T C C T G A A C G T A C G T A C G T

SFL1(MacIsaac)/Yeast

Match Rank:8
Score:0.61
Offset:6
Orientation:forward strand
Alignment:ADGGYAGYAGCATCT
------GAAGCTTC-
 C T G A C G A T C T A G T C A G G A T C C T G A T C A G G A T C C T G A A C T G A G T C G C T A A C G T A G T C G C A T
A C G T A C G T A C G T A C G T A C G T A C G T A C T G C G T A C G T A A C T G A G T C A C G T A C G T A G T C A C G T

PB0050.1_Osr1_1/Jaspar

Match Rank:9
Score:0.61
Offset:-1
Orientation:forward strand
Alignment:-ADGGYAGYAGCATCT
ATTTACAGTAGCAAAA
 A C G T C T G A C G A T C T A G T C A G G A T C C T G A T C A G G A T C C T G A A C T G A G T C G C T A A C G T A G T C G C A T
G C A T G C A T C G A T G C A T G T C A G A T C C T G A A C T G C G A T C T G A C T A G A G T C G C T A T G C A G C T A C T G A

Ascl2(bHLH)/ESC-Ascl2-ChIP-Seq(GSE97712)/Homer

Match Rank:10
Score:0.60
Offset:3
Orientation:forward strand
Alignment:ADGGYAGYAGCATCT
---SSRGCAGCTGCH
 C T G A C G A T C T A G T C A G G A T C C T G A T C A G G A T C C T G A A C T G A G T C G C T A A C G T A G T C G C A T
A C G T A C G T A C G T T A C G T A C G C T A G T C A G A G T C C G T A A T C G A T G C A C G T A C T G A G T C G A C T