Information for PPARa(NR),DR1/Liver-Ppara-ChIP-Seq(GSE47954)/Homer (Motif 290)

T G A C C G A T C T G A C T A G C T A G A C G T A T G C T G C A T C G A C T G A C T A G C A T G A C G T A G T C C G T A
Reverse Opposite:
G C A T T C A G T G C A G T A C G A T C A G C T A G C T A C G T T A C G T G C A G A T C G A T C G A C T G C T A A C T G
p-value:1e-989
log p-value:-2.279e+03
FDR:NA
Information Content per bp:1.560
Number of Target Sequences with motif2503.0
Percentage of Target Sequences with motif25.14%
Number of Background Sequences with motif1956.9
Percentage of Background Sequences with motif4.98%
Average Position of motif in Targets0 +/- 0bp
Average Position of motif in Background0 +/- 0bp
Strand Bias (log2 ratio + to - strand density)0
Multiplicity (# of sites on avg that occur together)1
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PPARa(NR),DR1/Liver-Ppara-ChIP-Seq(GSE47954)/Homer

Match Rank:1
Score:1.00
Offset:0
Orientation:forward strand
Alignment:VNAGGKCAAAGGTCA
VNAGGKCAAAGGTCA
 T G A C C G A T C T G A C T A G C T A G A C G T A T G C T G C A T C G A C T G A C T A G C A T G A C G T A G T C C G T A
T G A C C G A T C T G A C T A G C T A G A C G T A T G C T G C A T C G A C T G A C T A G C A T G A C G T A G T C C G T A

Pparg::Rxra/MA0065.2/Jaspar

Match Rank:2
Score:0.97
Offset:0
Orientation:forward strand
Alignment:VNAGGKCAAAGGTCA
GTAGGGCAAAGGTCA
 T G A C C G A T C T G A C T A G C T A G A C G T A T G C T G C A T C G A C T G A C T A G C A T G A C G T A G T C C G T A
A T C G A G C T C T G A C T A G C T A G C A T G T A G C T G C A T C G A C T G A C T A G C A T G A C G T A T G C G C T A

RXR(NR),DR1/3T3L1-RXR-ChIP-Seq(GSE13511)/Homer

Match Rank:3
Score:0.97
Offset:1
Orientation:forward strand
Alignment:VNAGGKCAAAGGTCA
-TAGGGCAAAGGTCA
 T G A C C G A T C T G A C T A G C T A G A C G T A T G C T G C A T C G A C T G A C T A G C A T G A C G T A G T C C G T A
A C G T A G C T C T G A C T A G C T A G A C T G T A G C T G C A T C G A C T G A C T A G C A T G A C G T A T G C T C G A

PPARE(NR),DR1/3T3L1-Pparg-ChIP-Seq(GSE13511)/Homer

Match Rank:4
Score:0.96
Offset:1
Orientation:reverse strand
Alignment:VNAGGKCAAAGGTCA
-TGGGGCAAAGGTCA
 T G A C C G A T C T G A C T A G C T A G A C G T A T G C T G C A T C G A C T G A C T A G C A T G A C G T A G T C C G T A
A C G T C A G T C T A G C A T G C T A G C A T G T A G C T G C A T C G A C T G A C T A G C A T G A C G T A T G C G C T A

TR4(NR),DR1/Hela-TR4-ChIP-Seq(GSE24685)/Homer

Match Rank:5
Score:0.94
Offset:1
Orientation:forward strand
Alignment:VNAGGKCAAAGGTCA
-GAGGTCAAAGGTCA
 T G A C C G A T C T G A C T A G C T A G A C G T A T G C T G C A T C G A C T G A C T A G C A T G A C G T A G T C C G T A
A C G T T C A G C T G A C T A G C A T G A C G T A T G C C T G A C T G A C T G A C T A G C A T G A C G T A T G C C T G A

Nr2f6/MA0677.1/Jaspar

Match Rank:6
Score:0.94
Offset:1
Orientation:forward strand
Alignment:VNAGGKCAAAGGTCA
-GAGGTCAAAGGTCA
 T G A C C G A T C T G A C T A G C T A G A C G T A T G C T G C A T C G A C T G A C T A G C A T G A C G T A G T C C G T A
A C G T T C A G T C G A C A T G C A T G A C G T A G T C C G T A C T G A T C G A A C T G C A T G A C G T A G T C C T G A

NR2F1(var.2)/MA1537.1/Jaspar

Match Rank:7
Score:0.94
Offset:1
Orientation:forward strand
Alignment:VNAGGKCAAAGGTCA-
-GAGGTCAAAGGTCAC
 T G A C C G A T C T G A C T A G C T A G A C G T A T G C T G C A T C G A C T G A C T A G C A T G A C G T A G T C C G T A A C G T
A C G T T C A G T C G A C A T G C A T G A C G T A G T C C T G A C T G A T C G A C A T G C A T G A C G T A G T C C T G A G T A C

THRB/MA1574.1/Jaspar

Match Rank:8
Score:0.93
Offset:1
Orientation:forward strand
Alignment:VNAGGKCAAAGGTCA-
-GGGGTCAAAGGTCAT
 T G A C C G A T C T G A C T A G C T A G A C G T A T G C T G C A T C G A C T G A C T A G C A T G A C G T A G T C C G T A A C G T
A C G T T C A G T C A G C A T G C A T G A C G T A G T C T C G A C T G A T C G A C A T G C A T G A C G T A G T C C T G A A G C T

NR2C2/MA0504.1/Jaspar

Match Rank:9
Score:0.93
Offset:0
Orientation:forward strand
Alignment:VNAGGKCAAAGGTCA
AGGGGTCAGAGGTCA
 T G A C C G A T C T G A C T A G C T A G A C G T A T G C T G C A T C G A C T G A C T A G C A T G A C G T A G T C C G T A
T G C A T C A G T C A G A C T G C A T G C A G T A T G C C T G A C T A G C T G A C T A G C A T G A C G T A G T C C T G A

PPARD/MA1550.1/Jaspar

Match Rank:10
Score:0.93
Offset:0
Orientation:forward strand
Alignment:VNAGGKCAAAGGTCA-
AGGGGTCAAAGGTCAA
 T G A C C G A T C T G A C T A G C T A G A C G T A T G C T G C A T C G A C T G A C T A G C A T G A C G T A G T C C G T A A C G T
G C T A T C A G T C A G C T A G C A T G A C G T A G T C C T G A C T G A T C G A C A T G C A T G A C G T A G T C C T G A G T C A