Information for Pitx1:Ebox(Homeobox,bHLH)/Hindlimb-Pitx1-ChIP-Seq(GSE41591)/Homer (Motif 287)

G A C T C G A T C T G A G T C A G A C T C G A T T C G A C G T A G C T A G C T A T G A C G T A C C G T A A C T G T G C A C G A T A C T G A C G T
Reverse Opposite:
T G C A G T A C C G T A A C G T T G A C C G A T A C T G A C T G C G A T C G A T G C A T A G C T G C T A C T G A A C G T G A C T G C T A C T G A
p-value:1e-461
log p-value:-1.062e+03
FDR:NA
Information Content per bp:1.551
Number of Target Sequences with motif871.0
Percentage of Target Sequences with motif6.37%
Number of Background Sequences with motif283.0
Percentage of Background Sequences with motif0.81%
Average Position of motif in Targets0 +/- 0bp
Average Position of motif in Background0 +/- 0bp
Strand Bias (log2 ratio + to - strand density)0
Multiplicity (# of sites on avg that occur together)1
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Pitx1:Ebox(Homeobox,bHLH)/Hindlimb-Pitx1-ChIP-Seq(GSE41591)/Homer

Match Rank:1
Score:1.00
Offset:0
Orientation:forward strand
Alignment:YTAATTRAWWCCAGATGT
YTAATTRAWWCCAGATGT
 G A C T C G A T C T G A G T C A G A C T C G A T T C G A C G T A G C T A G C T A T G A C G T A C C G T A A C T G T G C A C G A T A C T G A C G T
G A C T C G A T C T G A G T C A G A C T C G A T T C G A C G T A G C T A G C T A T G A C G T A C C G T A A C T G T G C A C G A T A C T G A C G T

TCF4(bHLH)/SHSY5Y-TCF4-ChIP-Seq(GSE96915)/Homer

Match Rank:2
Score:0.79
Offset:9
Orientation:reverse strand
Alignment:YTAATTRAWWCCAGATGT-
---------DMCAGATGKS
 G A C T C G A T C T G A G T C A G A C T C G A T T C G A C G T A G C T A G C T A T G A C G T A C C G T A A C T G T G C A C G A T A C T G A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T C G T A T G A C A G T C C G T A A C T G G T C A A C G T A C T G A C G T A T G C

TWIST1/MA1123.2/Jaspar

Match Rank:3
Score:0.77
Offset:7
Orientation:forward strand
Alignment:YTAATTRAWWCCAGATGT--
-------ATTCCAGATGTTT
 G A C T C G A T C T G A G T C A G A C T C G A T T C G A C G T A G C T A G C T A T G A C G T A C C G T A A C T G T G C A C G A T A C T G A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T C G T A C G A T C G A T T G A C G T A C C G T A A C T G T G C A G A C T A C T G A C G T A G C T G C A T

BHLHA15(bHLH)/NIH3T3-BHLHB8.HA-ChIP-Seq(GSE119782)/Homer

Match Rank:4
Score:0.76
Offset:8
Orientation:forward strand
Alignment:YTAATTRAWWCCAGATGT
--------NAMCAGCTGK
 G A C T C G A T C T G A G T C A G A C T C G A T T C G A C G T A G C T A G C T A T G A C G T A C C G T A A C T G T G C A C G A T A C T G A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T C T A G T C G A T G A C A G T C C G T A A C T G G T A C A C G T A C T G A C T G

Twist2(bHLH)/Myoblast-Twist2.Ty1-ChIP-Seq(GSE127998)/Homer

Match Rank:5
Score:0.75
Offset:10
Orientation:forward strand
Alignment:YTAATTRAWWCCAGATGT--
----------MCAGCTGBYH
 G A C T C G A T C T G A G T C A G A C T C G A T T C G A C G T A G C T A G C T A T G A C G T A C C G T A A C T G T G C A C G A T A C T G A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T T G A C A G T C C G T A A C T G G T A C A C G T A C T G A C G T G A C T G A T C

PL0012.1_hlh-2::hlh-8/Jaspar

Match Rank:6
Score:0.74
Offset:6
Orientation:reverse strand
Alignment:YTAATTRAWWCCAGATGT----
------NANACCAGATGTTTNN
 G A C T C G A T C T G A G T C A G A C T C G A T T C G A C G T A G C T A G C T A T G A C G T A C C G T A A C T G T G C A C G A T A C T G A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T C A T G T G C A G C A T C T G A T G A C T G A C C G T A A C T G T C G A A C G T C A T G A C G T A C G T A C G T T C G A G A C T

Ptf1a/MA1618.1/Jaspar

Match Rank:7
Score:0.74
Offset:8
Orientation:forward strand
Alignment:YTAATTRAWWCCAGATGT---
--------AAACAGATGTTTA
 G A C T C G A T C T G A G T C A G A C T C G A T T C G A C G T A G C T A G C T A T G A C G T A C C G T A A C T G T G C A C G A T A C T G A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T C G T A T G C A T G C A G A T C T C G A A C T G T G C A G A C T C T A G A C G T A G C T A C G T G T C A

HAND2/MA1638.1/Jaspar

Match Rank:8
Score:0.74
Offset:9
Orientation:forward strand
Alignment:YTAATTRAWWCCAGATGT-
---------ACCAGATGGC
 G A C T C G A T C T G A G T C A G A C T C G A T T C G A C G T A G C T A G C T A T G A C G T A C C G T A A C T G T G C A C G A T A C T G A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T C T G A T G A C A T G C T C G A A C T G T C G A A G C T T C A G A C T G G A T C

Olig2(bHLH)/Neuron-Olig2-ChIP-Seq(GSE30882)/Homer

Match Rank:9
Score:0.73
Offset:9
Orientation:reverse strand
Alignment:YTAATTRAWWCCAGATGT-
---------AACAKATGGY
 G A C T C G A T C T G A G T C A G A C T C G A T T C G A C G T A G C T A G C T A T G A C G T A C C G T A A C T G T G C A C G A T A C T G A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T C T G A T G C A A G T C T C G A A C T G T G C A G C A T A C T G A C T G G A C T

Bhlha15/MA0607.1/Jaspar

Match Rank:10
Score:0.73
Offset:10
Orientation:forward strand
Alignment:YTAATTRAWWCCAGATGT
----------CCATATGT
 G A C T C G A T C T G A G T C A G A C T C G A T T C G A C G T A G C T A G C T A T G A C G T A C C G T A A C T G T G C A C G A T A C T G A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T T A G C A G T C C G T A A C G T G T C A A C G T A C T G A G C T