Information for Phox2b(Homeobox)/CLBGA-PHOX2B-ChIP-Seq(GSE90683)/Homer (Motif 284)

C G A T A C G T C G T A C G T A A C G T A G C T T G C A C T G A C G T A A C G T A C G T C G T A
Reverse Opposite:
A C G T C G T A C G T A A C G T A G C T A C G T C T G A C G T A A C G T A C G T C G T A G C T A
p-value:1e-3488
log p-value:-8.033e+03
FDR:NA
Information Content per bp:1.851
Number of Target Sequences with motif10650.0
Percentage of Target Sequences with motif12.29%
Number of Background Sequences with motif2356.1
Percentage of Background Sequences with motif2.77%
Average Position of motif in Targets0 +/- 0bp
Average Position of motif in Background0 +/- 0bp
Strand Bias (log2 ratio + to - strand density)0
Multiplicity (# of sites on avg that occur together)1
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Phox2b(Homeobox)/CLBGA-PHOX2B-ChIP-Seq(GSE90683)/Homer

Match Rank:1
Score:1.00
Offset:0
Orientation:forward strand
Alignment:TTAATTNAATTA
TTAATTNAATTA
 C G A T A C G T C G T A C G T A A C G T A G C T T G C A C T G A C G T A A C G T A C G T C G T A
C G A T A C G T C G T A C G T A A C G T A G C T T G C A C T G A C G T A A C G T A C G T C G T A

PROP1/MA0715.1/Jaspar

Match Rank:2
Score:0.98
Offset:1
Orientation:reverse strand
Alignment:TTAATTNAATTA
-TAATTAAATTA
 C G A T A C G T C G T A C G T A A C G T A G C T T G C A C T G A C G T A A C G T A C G T C G T A
A C G T G C A T C T G A C G T A G A C T C A G T G C T A C T G A C G T A A G C T C G A T C G T A

PHOX2A/MA0713.1/Jaspar

Match Rank:3
Score:0.95
Offset:1
Orientation:reverse strand
Alignment:TTAATTNAATTA
-TAATTAAATTA
 C G A T A C G T C G T A C G T A A C G T A G C T T G C A C T G A C G T A A C G T A C G T C G T A
A C G T G C A T C G T A T C G A A G C T A G C T C T G A T C G A C T G A G A C T G A C T C G T A

Phox2a(Homeobox)/Neuron-Phox2a-ChIP-Seq(GSE31456)/Homer

Match Rank:4
Score:0.94
Offset:0
Orientation:forward strand
Alignment:TTAATTNAATTA
YTAATYNRATTA
 C G A T A C G T C G T A C G T A A C G T A G C T T G C A C T G A C G T A A C G T A C G T C G T A
G A T C G C A T C T G A C G T A A G C T A G C T C G T A T C G A C T G A A C G T G C A T C G T A

Prop1(Homeobox)/GHFT1-PROP1.biotin-ChIP-Seq(GSE77302)/Homer

Match Rank:5
Score:0.92
Offset:1
Orientation:reverse strand
Alignment:TTAATTNAATTA-
-TAATTNVATTAN
 C G A T A C G T C G T A C G T A A C G T A G C T T G C A C T G A C G T A A C G T A C G T C G T A A C G T
A C G T G C A T C T G A C G T A A G C T A C G T G T A C T C G A C T G A A C G T G A C T C G T A C A T G

PHOX2B/MA0681.2/Jaspar

Match Rank:6
Score:0.88
Offset:-2
Orientation:reverse strand
Alignment:--TTAATTNAATTA--
NNATAATTTGATTANN
 A C G T A C G T C G A T A C G T C G T A C G T A A C G T A G C T T G C A C T G A C G T A A C G T A C G T C G T A A C G T A C G T
C G T A C G A T G C T A G C A T C G T A G C T A G C A T C G A T C G A T C T A G C G T A G C A T G C A T C G T A C G T A G C T A

Pax7(Paired,Homeobox),long/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer

Match Rank:7
Score:0.88
Offset:0
Orientation:reverse strand
Alignment:TTAATTNAATTA
GTAATCDGATTA
 C G A T A C G T C G T A C G T A A C G T A G C T T G C A C T G A C G T A A C G T A C G T C G T A
C A T G C G A T T C G A C T G A G C A T A G T C C A T G T C A G C T G A A C G T G A C T C G T A

CES-1(Homeobox)/cElegans-L1-CES1-ChIP-Seq(modEncode)/Homer

Match Rank:8
Score:0.87
Offset:1
Orientation:forward strand
Alignment:TTAATTNAATTA-
-AAATTSAATTTN
 C G A T A C G T C G T A C G T A A C G T A G C T T G C A C T G A C G T A A C G T A C G T C G T A A C G T
A C G T G C T A C T G A C G T A A G C T A G C T A T C G T C G A C T G A A C G T G A C T C G A T A C T G

LMX1B/MA0703.2/Jaspar

Match Rank:9
Score:0.79
Offset:0
Orientation:reverse strand
Alignment:TTAATTNAATTA
TTAATTAAANT-
 C G A T A C G T C G T A C G T A A C G T A G C T T G C A C T G A C G T A A C G T A C G T C G T A
C A G T A C G T C G T A C G T A A C G T A C G T C G T A T C G A G C T A G C T A G A C T A C G T

CG7056/dmmpmm(Noyes_hd)/fly

Match Rank:10
Score:0.78
Offset:0
Orientation:reverse strand
Alignment:TTAATTNAATTA
NTAATTAAAN--
 C G A T A C G T C G T A C G T A A C G T A G C T T G C A C T G A C G T A A C G T A C G T C G T A
A C T G A G C T G C T A T C G A A C G T G C A T T G C A C T G A C G T A C G A T A C G T A C G T