Information for Phox2a(Homeobox)/Neuron-Phox2a-ChIP-Seq(GSE31456)/Homer (Motif 283)

G A T C G C A T C T G A C G T A A G C T A G C T C G T A T C G A C T G A A C G T G C A T C G T A
Reverse Opposite:
G C A T C G T A C G T A G A C T A G C T G C A T T C G A T C G A A C G T G A C T C G T A C T A G
p-value:1e-356
log p-value:-8.218e+02
FDR:NA
Information Content per bp:1.638
Number of Target Sequences with motif553.0
Percentage of Target Sequences with motif34.85%
Number of Background Sequences with motif1681.3
Percentage of Background Sequences with motif3.83%
Average Position of motif in Targets0 +/- 0bp
Average Position of motif in Background0 +/- 0bp
Strand Bias (log2 ratio + to - strand density)0
Multiplicity (# of sites on avg that occur together)1
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Phox2a(Homeobox)/Neuron-Phox2a-ChIP-Seq(GSE31456)/Homer

Match Rank:1
Score:1.00
Offset:0
Orientation:forward strand
Alignment:YTAATYNRATTA
YTAATYNRATTA
 G A T C G C A T C T G A C G T A A G C T A G C T C G T A T C G A C T G A A C G T G C A T C G T A
G A T C G C A T C T G A C G T A A G C T A G C T C G T A T C G A C T G A A C G T G C A T C G T A

Prop1(Homeobox)/GHFT1-PROP1.biotin-ChIP-Seq(GSE77302)/Homer

Match Rank:2
Score:0.97
Offset:0
Orientation:forward strand
Alignment:YTAATYNRATTA
NTAATBNAATTA
 G A T C G C A T C T G A C G T A A G C T A G C T C G T A T C G A C T G A A C G T G C A T C G T A
G T A C G C A T C T G A C G T A G A C T A G C T C A T G T G C A C T G A A C G T G A C T C G T A

PROP1/MA0715.1/Jaspar

Match Rank:3
Score:0.95
Offset:1
Orientation:reverse strand
Alignment:YTAATYNRATTA
-TAATTAAATTA
 G A T C G C A T C T G A C G T A A G C T A G C T C G T A T C G A C T G A A C G T G C A T C G T A
A C G T G C A T C T G A C G T A G A C T C A G T G C T A C T G A C G T A A G C T C G A T C G T A

PHOX2A/MA0713.1/Jaspar

Match Rank:4
Score:0.95
Offset:1
Orientation:reverse strand
Alignment:YTAATYNRATTA
-TAATTAAATTA
 G A T C G C A T C T G A C G T A A G C T A G C T C G T A T C G A C T G A A C G T G C A T C G T A
A C G T G C A T C G T A T C G A A G C T A G C T C T G A T C G A C T G A G A C T G A C T C G T A

Pax7(Paired,Homeobox),long/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer

Match Rank:5
Score:0.94
Offset:1
Orientation:forward strand
Alignment:YTAATYNRATTA-
-TAATCHGATTAC
 G A T C G C A T C T G A C G T A A G C T A G C T C G T A T C G A C T G A A C G T G C A T C G T A A C G T
A C G T G C A T C T G A T G C A G A C T A G T C G T A C T C A G C G T A A G C T A C G T G C T A G T A C

Phox2b(Homeobox)/CLBGA-PHOX2B-ChIP-Seq(GSE90683)/Homer

Match Rank:6
Score:0.94
Offset:0
Orientation:forward strand
Alignment:YTAATYNRATTA
TTAATTNAATTA
 G A T C G C A T C T G A C G T A A G C T A G C T C G T A T C G A C T G A A C G T G C A T C G T A
C G A T A C G T C G T A C G T A A C G T A G C T T G C A C T G A C G T A A C G T A C G T C G T A

CES-1(Homeobox)/cElegans-L1-CES1-ChIP-Seq(modEncode)/Homer

Match Rank:7
Score:0.90
Offset:0
Orientation:reverse strand
Alignment:YTAATYNRATTA
NAAATTSAATTT
 G A T C G C A T C T G A C G T A A G C T A G C T C G T A T C G A C T G A A C G T G C A T C G T A
T G A C G C T A C T G A C G T A A G C T A G C T T A G C T C G A C T G A A C G T G A C T C G A T

PHOX2B/MA0681.2/Jaspar

Match Rank:8
Score:0.88
Offset:-2
Orientation:reverse strand
Alignment:--YTAATYNRATTA--
NNATAATTTGATTANN
 A C G T A C G T G A T C G C A T C T G A C G T A A G C T A G C T C G T A T C G A C T G A A C G T G C A T C G T A A C G T A C G T
C G T A C G A T G C T A G C A T C G T A G C T A G C A T C G A T C G A T C T A G C G T A G C A T G C A T C G T A C G T A G C T A

DUX4/MA0468.1/Jaspar

Match Rank:9
Score:0.77
Offset:1
Orientation:reverse strand
Alignment:YTAATYNRATTA
-TGATTAAATTA
 G A T C G C A T C T G A C G T A A G C T A G C T C G T A T C G A C T G A A C G T G C A T C G T A
A C G T C G A T C T A G C G T A A C G T C A G T T C G A T C G A C T G A A C G T A G C T C G T A

prd/dmmpmm(Papatsenko)/fly

Match Rank:10
Score:0.77
Offset:1
Orientation:forward strand
Alignment:YTAATYNRATTA
-TAATTGATTA-
 G A T C G C A T C T G A C G T A A G C T A G C T C G T A T C G A C T G A A C G T G C A T C G T A
A C G T A C G T C T G A C G T A A C G T A G C T T C A G T C G A G C A T G C A T C G T A A C G T