Information for PBX1(Homeobox)/MCF7-PBX1-ChIP-Seq(GSE28007)/Homer (Motif 278)

C T A G A T G C A T G C C G A T A C T G G A C T A T G C G C T A T G A C A G C T T A G C G C T A
Reverse Opposite:
C G A T A T C G T C G A A C T G C G A T A T C G C T G A A G T C C G T A A T C G T A C G G A T C
p-value:1e-843
log p-value:-1.943e+03
FDR:NA
Information Content per bp:1.843
Number of Target Sequences with motif879.0
Percentage of Target Sequences with motif4.38%
Number of Background Sequences with motif2.9
Percentage of Background Sequences with motif0.28%
Average Position of motif in Targets98.2 +/- 51.6bp
Average Position of motif in Background110.0 +/- 34.0bp
Strand Bias (log2 ratio + to - strand density)-0.1
Multiplicity (# of sites on avg that occur together)1.04
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PBX1(Homeobox)/MCF7-PBX1-ChIP-Seq(GSE28007)/Homer

Match Rank:1
Score:1.00
Offset:0
Orientation:forward strand
Alignment:GSCTGTCACTCA
GSCTGTCACTCA
 C T A G A T G C A T G C C G A T A C T G G A C T A T G C G C T A T G A C A G C T T A G C G C T A
C T A G A T G C A T G C C G A T A C T G G A C T A T G C G C T A T G A C A G C T T A G C G C T A

PBX3/MA1114.1/Jaspar

Match Rank:2
Score:0.97
Offset:-2
Orientation:reverse strand
Alignment:--GSCTGTCACTCA---
NNNCCTGTCACTCANNN
 A C G T A C G T C T A G A T G C A T G C C G A T A C T G G A C T A T G C G C T A T G A C A G C T T A G C G C T A A C G T A C G T A C G T
T A G C A G T C T A C G A T G C T G A C G A C T A T C G G A C T A T G C G T C A T G A C G C A T A G T C G C T A T G A C T G A C A T G C

Pbx3(Homeobox)/GM12878-PBX3-ChIP-Seq(GSE32465)/Homer

Match Rank:3
Score:0.97
Offset:1
Orientation:forward strand
Alignment:GSCTGTCACTCA-
-NCTGTCAATCAN
 C T A G A T G C A T G C C G A T A C T G G A C T A T G C G C T A T G A C A G C T T A G C G C T A A C G T
A C G T T A G C T A G C G A C T C T A G A G C T A G T C G T C A T G C A A C G T A T G C G C T A T G C A

PKNOX1/MA0782.2/Jaspar

Match Rank:4
Score:0.95
Offset:-1
Orientation:reverse strand
Alignment:-GSCTGTCACTCA--
NNGCTGTCACTCANN
 A C G T C T A G A T G C A T G C C G A T A C T G G A C T A T G C G C T A T G A C A G C T T A G C G C T A A C G T A C G T
G A C T T C G A A T C G T G A C G C A T C T A G G A C T T A G C G C T A T G A C G A C T A G T C G C T A C G T A G C T A

Pknox1(Homeobox)/ES-Prep1-ChIP-Seq(GSE63282)/Homer

Match Rank:5
Score:0.94
Offset:1
Orientation:forward strand
Alignment:GSCTGTCACTCA-
-SCTGTCAVTCAV
 C T A G A T G C A T G C C G A T A C T G G A C T A T G C G C T A T G A C A G C T T A G C G C T A A C G T
A C G T T A C G A T G C G A C T A C T G A G C T A G T C G T C A T G C A A C G T A G T C G C T A T G C A

PH0141.1_Pknox2/Jaspar

Match Rank:6
Score:0.78
Offset:-4
Orientation:forward strand
Alignment:----GSCTGTCACTCA
AAGCACCTGTCAATAT
 A C G T A C G T A C G T A C G T C T A G A T G C A T G C C G A T A C T G G A C T A T G C G C T A T G A C A G C T T A G C G C T A
G C T A C T G A T C A G A T G C T C G A T A G C G T A C A G C T A C T G G A C T A G T C C T G A G T C A G C A T G C T A A G C T

MEIS2/MA0774.1/Jaspar

Match Rank:7
Score:0.78
Offset:1
Orientation:reverse strand
Alignment:GSCTGTCACTCA
-GCTGTCAA---
 C T A G A T G C A T G C C G A T A C T G G A C T A T G C G C T A T G A C A G C T T A G C G C T A
A C G T A T C G A T G C A C G T C A T G G C A T A G T C G T C A G C T A A C G T A C G T A C G T

achi/MA0207.1/Jaspar

Match Rank:8
Score:0.77
Offset:2
Orientation:reverse strand
Alignment:GSCTGTCACTCA
--CTGTCA----
 C T A G A T G C A T G C C G A T A C T G G A C T A T G C G C T A T G A C A G C T T A G C G C T A
A C G T A C G T G A T C A C G T C T A G A C G T A G T C C G T A A C G T A C G T A C G T A C G T

Meis1(Homeobox)/MastCells-Meis1-ChIP-Seq(GSE48085)/Homer

Match Rank:9
Score:0.76
Offset:0
Orientation:forward strand
Alignment:GSCTGTCACTCA
VGCTGWCAVB--
 C T A G A T G C A T G C C G A T A C T G G A C T A T G C G C T A T G A C A G C T T A G C G C T A
T C A G T A C G T A G C A C G T A C T G C G A T A G T C C G T A T A C G A G T C A C G T A C G T

MEIS3/MA0775.1/Jaspar

Match Rank:10
Score:0.76
Offset:1
Orientation:reverse strand
Alignment:GSCTGTCACTCA
-CCTGTCAA---
 C T A G A T G C A T G C C G A T A C T G G A C T A T G C G C T A T G A C A G C T T A G C G C T A
A C G T T A G C T G A C G A C T C T A G G A C T A T G C C G T A G C T A A C G T A C G T A C G T