Information for Pax8(Paired,Homeobox)/Thyroid-Pax8-ChIP-Seq(GSE26938)/Homer (Motif 277)

A C T G A G C T A G T C G T C A A G C T T C A G A T G C G A T C G C A T A T C G T C G A T A G C C G A T C A T G T A G C
Reverse Opposite:
A T C G G T A C C G T A A T C G A G C T A T G C C G T A C T A G A T C G A G T C T C G A C A G T T C A G T C G A T G A C
p-value:1e-361
log p-value:-8.327e+02
FDR:NA
Information Content per bp:1.616
Number of Target Sequences with motif1108.0
Percentage of Target Sequences with motif8.47%
Number of Background Sequences with motif684.3
Percentage of Background Sequences with motif1.90%
Average Position of motif in Targets50.3 +/- 21.9bp
Average Position of motif in Background50.6 +/- 30.7bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.04
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Pax8(Paired,Homeobox)/Thyroid-Pax8-ChIP-Seq(GSE26938)/Homer

Match Rank:1
Score:1.00
Offset:0
Orientation:forward strand
Alignment:GTCATGCHTGRCTGS
GTCATGCHTGRCTGS
 A C T G A G C T A G T C G T C A A G C T T C A G A T G C G A T C G C A T A T C G T C G A T A G C C G A T C A T G T A G C
A C T G A G C T A G T C G T C A A G C T T C A G A T G C G A T C G C A T A T C G T C G A T A G C C G A T C A T G T A G C

PAX5(Paired,Homeobox)/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer

Match Rank:2
Score:0.95
Offset:-1
Orientation:reverse strand
Alignment:-GTCATGCHTGRCTGS
NGTCACGCTTGGCTGC
 A C G T A C T G A G C T A G T C G T C A A G C T T C A G A T G C G A T C G C A T A T C G T C G A T A G C C G A T C A T G T A G C
C T A G A C T G A G C T A G T C G T C A G A T C T C A G A T G C G C A T G A C T A T C G T C A G T A G C G A C T C T A G T G A C

PAX9/MA0781.1/Jaspar

Match Rank:3
Score:0.85
Offset:-1
Orientation:forward strand
Alignment:-GTCATGCHTGRCTGS-
CGTCACGCATGACTGCA
 A C G T A C T G A G C T A G T C G T C A A G C T T C A G A T G C G A T C G C A T A T C G T C G A T A G C C G A T C A T G T A G C A C G T
A T G C A C T G G C A T A G T C T G C A A G T C A C T G A T G C G C T A G A C T A T C G C T G A T A G C G A C T C A T G T G A C G T C A

PAX1/MA0779.1/Jaspar

Match Rank:4
Score:0.84
Offset:-1
Orientation:forward strand
Alignment:-GTCATGCHTGRCTGS-
CGTCACGCATGACTGCA
 A C G T A C T G A G C T A G T C G T C A A G C T T C A G A T G C G A T C G C A T A T C G T C G A T A G C C G A T C A T G T A G C A C G T
A T G C C A T G G C A T G A T C T G C A G A T C C A T G A T G C G C T A G A C T A T C G T C G A T A G C G A C T C A T G T G A C G T C A

sv/MA1461.1/Jaspar

Match Rank:5
Score:0.82
Offset:-1
Orientation:reverse strand
Alignment:-GTCATGCHTGRCTGS-
CGTCACGCATGANTGCN
 A C G T A C T G A G C T A G T C G T C A A G C T T C A G A T G C G A T C G C A T A T C G T C G A T A G C C G A T C A T G T A G C A C G T
A T G C A C T G G C A T A G T C G T C A A G T C T C A G A T G C G C T A G A C T A T C G T C G A T A G C G A C T C T A G T G A C T C A G

PAX6/MA0069.1/Jaspar

Match Rank:6
Score:0.71
Offset:0
Orientation:forward strand
Alignment:GTCATGCHTGRCTGS
TTCACGCATGAGTT-
 A C T G A G C T A G T C G T C A A G C T T C A G A T G C G A T C G C A T A T C G T C G A T A G C C G A T C A T G T A G C
A C G T G A C T G A T C G T C A G A T C C A T G A T G C C G T A A G C T A T C G C T G A T A C G A G C T C A G T A C G T

PAX6(Paired,Homeobox)/Forebrain-Pax6-ChIP-Seq(GSE66961)/Homer

Match Rank:7
Score:0.71
Offset:0
Orientation:reverse strand
Alignment:GTCATGCHTGRCTGS-----
TTTMCGCTTSABTGAACACN
 A C T G A G C T A G T C G T C A A G C T T C A G A T G C G A T C G C A T A T C G T C G A T A G C C G A T C A T G T A G C A C G T A C G T A C G T A C G T A C G T
A G C T C A G T G A C T T G A C G A T C T C A G A T G C G C A T A G C T T A C G C T G A A T C G G A C T C T A G T G C A T C G A A G T C G C T A A T G C T C G A

PL0008.1_hlh-29/Jaspar

Match Rank:8
Score:0.59
Offset:-3
Orientation:reverse strand
Alignment:---GTCATGCHTGRCTGS
TNNGCCACGCGTGNNNN-
 A C G T A C G T A C G T A C T G A G C T A G T C G T C A A G C T T C A G A T G C G A T C G C A T A T C G T C G A T A G C C G A T C A T G T A G C
G A C T C G A T C A T G C T A G G T A C A G T C C G T A A G T C C T A G A G T C C T A G G A C T T C A G C T A G G A T C G C T A T C A G A C G T

prd-PD/dmmpmm(Bergman)/fly

Match Rank:9
Score:0.59
Offset:-4
Orientation:forward strand
Alignment:----GTCATGCHTGRCTGS
TNTCGTCACGGTTGACA--
 A C G T A C G T A C G T A C G T A C T G A G C T A G T C G T C A A G C T T C A G A T G C G A T C G C A T A T C G T C G A T A G C C G A T C A T G T A G C
C A G T A T C G G A C T A T G C A C T G A C G T A G T C C G T A A G T C A C T G A T C G A C G T A G C T A T C G C T G A A G T C T G C A A C G T A C G T

ASH1/Literature(Harbison)/Yeast

Match Rank:10
Score:0.59
Offset:7
Orientation:forward strand
Alignment:GTCATGCHTGRCTGS
-------CTGACT--
 A C T G A G C T A G T C G T C A A G C T T C A G A T G C G A T C G C A T A T C G T C G A T A G C C G A T C A T G T A G C
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A G C T A C G T A C T G C G T A A G T C A C G T A C G T A C G T