Information for PAX6(Paired,Homeobox)/Forebrain-Pax6-ChIP-Seq(GSE66961)/Homer (Motif 273)

A G C T T A C G C G A T T C A G A G C T A C G T G A T C C T G A T A G C A G C T A T G C C T G A C G T A A T C G A G T C C T A G A C T G C T G A G T C A T C G A
Reverse Opposite:
A G C T C A G T G A C T T G A C G A T C T C A G A T G C G C A T A G C T T A C G C T G A A T C G G A C T C T A G T G C A T C G A A G T C G C T A A T G C T C G A
p-value:1e-975
log p-value:-2.246e+03
FDR:NA
Information Content per bp:1.548
Number of Target Sequences with motif692.0
Percentage of Target Sequences with motif21.98%
Number of Background Sequences with motif151.7
Percentage of Background Sequences with motif0.36%
Average Position of motif in Targets0 +/- 0bp
Average Position of motif in Background0 +/- 0bp
Strand Bias (log2 ratio + to - strand density)0
Multiplicity (# of sites on avg that occur together)1
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PAX6(Paired,Homeobox)/Forebrain-Pax6-ChIP-Seq(GSE66961)/Homer

Match Rank:1
Score:1.00
Offset:0
Orientation:forward strand
Alignment:NGTGTTCAVTSAAGCGKAAA
NGTGTTCAVTSAAGCGKAAA
 A G C T T A C G C G A T T C A G A G C T A C G T G A T C C T G A T A G C A G C T A T G C C T G A C G T A A T C G A G T C C T A G A C T G C T G A G T C A T C G A
A G C T T A C G C G A T T C A G A G C T A C G T G A T C C T G A T A G C A G C T A T G C C T G A C G T A A T C G A G T C C T A G A C T G C T G A G T C A T C G A

PAX6/MA0069.1/Jaspar

Match Rank:2
Score:0.80
Offset:6
Orientation:reverse strand
Alignment:NGTGTTCAVTSAAGCGKAAA
------AANTCATGCGTGAA
 A G C T T A C G C G A T T C A G A G C T A C G T G A T C C T G A T A G C A G C T A T G C C T G A C G T A A T C G A G T C C T A G A C T G C T G A G T C A T C G A
A C G T A C G T A C G T A C G T A C G T A C G T G T C A T C G A A G T C G A C T A T G C C T G A C G A T A T C G G A T C C T A G A C G T C T A G C G T A T C G A

PAX1/MA0779.1/Jaspar

Match Rank:3
Score:0.73
Offset:4
Orientation:reverse strand
Alignment:NGTGTTCAVTSAAGCGKAAA-
----NGCANTCATGCGTGACG
 A G C T T A C G C G A T T C A G A G C T A C G T G A T C C T G A T A G C A G C T A T G C C T G A C G T A A T C G A G T C C T A G A C T G C T G A G T C A T C G A A C G T
A C G T A C G T A C G T A C G T C A G T A C T G G T A C C T G A A T C G A G C T T A G C C T G A C G A T A T C G G A T C C T A G A C G T C T A G C G T A G T A C T A C G

PAX9/MA0781.1/Jaspar

Match Rank:4
Score:0.73
Offset:4
Orientation:reverse strand
Alignment:NGTGTTCAVTSAAGCGKAAA-
----TGCAGTCATGCGTGACG
 A G C T T A C G C G A T T C A G A G C T A C G T G A T C C T G A T A G C A G C T A T G C C T G A C G T A A T C G A G T C C T A G A C T G C T G A G T C A T C G A A C G T
A C G T A C G T A C G T A C G T C A G T A C T G G T A C C T G A A T C G A G C T A T G C C T G A C G A T A T C G A G T C C T A G A C G T C T A G C G T A G T A C T A C G

PAX5(Paired,Homeobox)/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer

Match Rank:5
Score:0.72
Offset:5
Orientation:forward strand
Alignment:NGTGTTCAVTSAAGCGKAAA-
-----GCAGCCAAGCGTGACN
 A G C T T A C G C G A T T C A G A G C T A C G T G A T C C T G A T A G C A G C T A T G C C T G A C G T A A T C G A G T C C T A G A C T G C T G A G T C A T C G A A C G T
A C G T A C G T A C G T A C G T A C G T A C T G G A T C C T G A A T C G A G T C T A G C C T G A C G T A T A C G A G T C C T A G C A G T T C A G T C G A T G A C G A T C

Pax8(Paired,Homeobox)/Thyroid-Pax8-ChIP-Seq(GSE26938)/Homer

Match Rank:6
Score:0.71
Offset:5
Orientation:reverse strand
Alignment:NGTGTTCAVTSAAGCGKAAA
-----SCAGYCADGCATGAC
 A G C T T A C G C G A T T C A G A G C T A C G T G A T C C T G A T A G C A G C T A T G C C T G A C G T A A T C G A G T C C T A G A C T G C T G A G T C A T C G A
A C G T A C G T A C G T A C G T A C G T A T C G G T A C C G T A A T C G A G C T A T G C C G T A C T A G A T C G A G T C T C G A C A G T T C A G T C G A T G A C

sv/MA1461.1/Jaspar

Match Rank:7
Score:0.71
Offset:4
Orientation:forward strand
Alignment:NGTGTTCAVTSAAGCGKAAA-
----CGCAGTCATGCGTGACG
 A G C T T A C G C G A T T C A G A G C T A C G T G A T C C T G A T A G C A G C T A T G C C T G A C G T A A T C G A G T C C T A G A C T G C T G A G T C A T C G A A C G T
A C G T A C G T A C G T A C G T A G T C A C T G G A T C C T G A A T C G A G C T T A G C C T G A C G A T A T C G A G T C C T A G C A G T C T A G C G T A T G A C T A C G

Nkx2-5(var.2)/MA0503.1/Jaspar

Match Rank:8
Score:0.57
Offset:3
Orientation:forward strand
Alignment:NGTGTTCAVTSAAGCGKAAA
---AGCCACTCAAG------
 A G C T T A C G C G A T T C A G A G C T A C G T G A T C C T G A T A G C A G C T A T G C C T G A C G T A A T C G A G T C C T A G A C T G C T G A G T C A T C G A
A C G T A C G T A C G T C T G A C T A G T A G C A G T C G C T A A G T C A C G T A G T C G T C A C T G A T A C G A C G T A C G T A C G T A C G T A C G T A C G T

PB0005.1_Bbx_1/Jaspar

Match Rank:9
Score:0.57
Offset:1
Orientation:forward strand
Alignment:NGTGTTCAVTSAAGCGKAAA
-TAATTCAATGAAGTG----
 A G C T T A C G C G A T T C A G A G C T A C G T G A T C C T G A T A G C A G C T A T G C C T G A C G T A A T C G A G T C C T A G A C T G C T G A G T C A T C G A
A C G T G C A T G C T A C T G A C G A T C G A T T G A C G C T A C G T A C G A T A C T G C G T A G C T A A T C G G C A T C T A G A C G T A C G T A C G T A C G T

NKX2-5/MA0063.2/Jaspar

Match Rank:10
Score:0.57
Offset:4
Orientation:forward strand
Alignment:NGTGTTCAVTSAAGCGKAAA
----ACCACTCAAAA-----
 A G C T T A C G C G A T T C A G A G C T A C G T G A T C C T G A T A G C A G C T A T G C C T G A C G T A A T C G A G T C C T A G A C T G C T G A G T C A T C G A
A C G T A C G T A C G T A C G T T C G A T G A C G A T C C T G A G A T C G C A T G A T C C G T A G C T A T C G A G C T A A C G T A C G T A C G T A C G T A C G T