Information for PAX5(Paired,Homeobox),condensed/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer (Motif 272)

A C T G G A C T A G T C C T G A G A T C T C A G A T G C G A C T A G T C A T G C T A G C A G C T A T C G T G C A
Reverse Opposite:
A C G T T A G C T C G A A T C G T A C G T C A G C T G A A T C G A G T C C T A G G A C T C T A G C T G A T G A C
p-value:
log p-value:-5.220e+02
FDR:0.000
Information Content per bp:1.681
Number of Target Sequences with motif
Percentage of Target Sequences with motif
Number of Background Sequences with motif
Percentage of Background Sequences with motif
Average Position of motif in Targets0 +/- 0bp
Average Position of motif in Background0 +/- 0bp
Strand Bias (log2 ratio + to - strand density)0
Multiplicity (# of sites on avg that occur together)1
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PAX5(Paired,Homeobox),condensed/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer

Match Rank:1
Score:1.00
Offset:0
Orientation:forward strand
Alignment:GTCACGCTCNCTGA
GTCACGCTCNCTGA
 A C T G G A C T A G T C C T G A G A T C T C A G A T G C G A C T A G T C A T G C T A G C A G C T A T C G T G C A
A C T G G A C T A G T C C T G A G A T C T C A G A T G C G A C T A G T C A T G C T A G C A G C T A T C G T G C A

PAX5/MA0014.3/Jaspar

Match Rank:2
Score:0.78
Offset:-3
Orientation:reverse strand
Alignment:---GTCACGCTCNCTGA
NNGGTCACGCTC-----
 A C G T A C G T A C G T A C T G G A C T A G T C C T G A G A T C T C A G A T G C G A C T A G T C A T G C T A G C A G C T A T C G T G C A
T C A G C A T G T C A G A T C G G A C T A T G C C G T A A G T C T C A G A T G C G A C T A G T C A C G T A C G T A C G T A C G T A C G T

Pax2/MA0067.1/Jaspar

Match Rank:3
Score:0.76
Offset:-1
Orientation:forward strand
Alignment:-GTCACGCTCNCTGA
AGTCACGC-------
 A C G T A C T G G A C T A G T C C T G A G A T C T C A G A T G C G A C T A G T C A T G C T A G C A G C T A T C G T G C A
G C T A C T A G G C A T A G T C C T G A G A T C C A T G A T C G A C G T A C G T A C G T A C G T A C G T A C G T A C G T

prd/dmmpmm(Noyes)/fly

Match Rank:4
Score:0.76
Offset:-5
Orientation:forward strand
Alignment:-----GTCACGCTCNCTGA
AATCCGTCACGCT------
 A C G T A C G T A C G T A C G T A C G T A C T G G A C T A G T C C T G A G A T C T C A G A T G C G A C T A G T C A T G C T A G C A G C T A T C G T G C A
T G C A G C T A A G C T A G T C T G A C A C T G C G A T A G T C G T C A A G T C C T A G A T G C G A C T A C G T A C G T A C G T A C G T A C G T A C G T

PAX3(var.2)/MA1546.1/Jaspar

Match Rank:5
Score:0.69
Offset:-2
Orientation:forward strand
Alignment:--GTCACGCTCNCTGA
CCGTCACGCTAATTAA
 A C G T A C G T A C T G G A C T A G T C C T G A G A T C T C A G A T G C G A C T A G T C A T G C T A G C A G C T A T C G T G C A
A G T C A T G C A C T G G C A T A G T C C T G A G A T C T C A G A T G C G A C T G C T A T C G A G C A T G A C T C G T A T C G A

prd-PD/dmmpmm(Bergman)/fly

Match Rank:6
Score:0.68
Offset:-4
Orientation:forward strand
Alignment:----GTCACGCTCNCTGA
TNTCGTCACGGTTGACA-
 A C G T A C G T A C G T A C G T A C T G G A C T A G T C C T G A G A T C T C A G A T G C G A C T A G T C A T G C T A G C A G C T A T C G T G C A
C A G T A T C G G A C T A T G C A C T G A C G T A G T C C G T A A G T C A C T G A T C G A C G T A G C T A T C G C T G A A G T C T G C A A C G T

RTG3/Literature(Harbison)/Yeast

Match Rank:7
Score:0.68
Offset:-1
Orientation:forward strand
Alignment:-GTCACGCTCNCTGA
GGTCAC---------
 A C G T A C T G G A C T A G T C C T G A G A T C T C A G A T G C G A C T A G T C A T G C T A G C A G C T A T C G T G C A
A C T G A C T G A C G T A G T C C G T A A G T C A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

HVH21(HD-KNOTTED)/Hordeum vulgare/AthaMap

Match Rank:8
Score:0.67
Offset:-4
Orientation:reverse strand
Alignment:----GTCACGCTCNCTGA
ANCTGTCACNNN------
 A C G T A C G T A C G T A C G T A C T G G A C T A G T C C T G A G A T C T C A G A T G C G A C T A G T C A T G C T A G C A G C T A T C G T G C A
G T C A G A T C T A G C A G C T C A T G A C G T A G T C T C G A A T G C T C G A A C G T T A C G A C G T A C G T A C G T A C G T A C G T A C G T

Hth/dmmpmm(Noyes_hd)/fly

Match Rank:9
Score:0.63
Offset:-3
Orientation:reverse strand
Alignment:---GTCACGCTCNCTGA
NCTGTCANAG-------
 A C G T A C G T A C G T A C T G G A C T A G T C C T G A G A T C T C A G A T G C G A C T A G T C A T G C T A G C A G C T A T C G T G C A
A T C G G T A C A G C T A C T G A C G T A G T C C G T A G T A C G T C A C A T G A C G T A C G T A C G T A C G T A C G T A C G T A C G T

RTG3(MacIsaac)/Yeast

Match Rank:10
Score:0.62
Offset:-3
Orientation:reverse strand
Alignment:---GTCACGCTCNCTGA
TGAGTCAT---------
 A C G T A C G T A C G T A C T G G A C T A G T C C T G A G A T C T C A G A T G C G A C T A G T C A T G C T A G C A G C T A T C G T G C A
G A C T C A T G T G C A A C T G A C G T A G T C C G T A A G C T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T