Information for PAX5(Paired,Homeobox)/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer (Motif 271)

A C T G G A T C C T G A A T C G A G T C T A G C C T G A C G T A T A C G A G T C C T A G C A G T T C A G T C G A T G A C G A T C
Reverse Opposite:
C T A G A C T G A G C T A G T C G T C A G A T C T C A G A T G C G C A T G A C T A T C G T C A G T A G C G A C T C T A G T G A C
p-value:
log p-value:-2.513e+03
FDR:0.000
Information Content per bp:1.590
Number of Target Sequences with motif
Percentage of Target Sequences with motif
Number of Background Sequences with motif
Percentage of Background Sequences with motif
Average Position of motif in Targets0 +/- 0bp
Average Position of motif in Background0 +/- 0bp
Strand Bias (log2 ratio + to - strand density)0
Multiplicity (# of sites on avg that occur together)1
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PAX5(Paired,Homeobox)/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer

Match Rank:1
Score:1.00
Offset:0
Orientation:forward strand
Alignment:GCAGCCAAGCGTGACN
GCAGCCAAGCGTGACN
 A C T G G A T C C T G A A T C G A G T C T A G C C T G A C G T A T A C G A G T C C T A G C A G T T C A G T C G A T G A C G A T C
A C T G G A T C C T G A A T C G A G T C T A G C C T G A C G T A T A C G A G T C C T A G C A G T T C A G T C G A T G A C G A T C

Pax8(Paired,Homeobox)/Thyroid-Pax8-ChIP-Seq(GSE26938)/Homer

Match Rank:2
Score:0.95
Offset:0
Orientation:reverse strand
Alignment:GCAGCCAAGCGTGACN
SCAGYCADGCATGAC-
 A C T G G A T C C T G A A T C G A G T C T A G C C T G A C G T A T A C G A G T C C T A G C A G T T C A G T C G A T G A C G A T C
A T C G G T A C C G T A A T C G A G C T A T G C C G T A C T A G A T C G A G T C T C G A C A G T T C A G T C G A T G A C A C G T

PAX9/MA0781.1/Jaspar

Match Rank:3
Score:0.88
Offset:-1
Orientation:reverse strand
Alignment:-GCAGCCAAGCGTGACN
TGCAGTCATGCGTGACG
 A C G T A C T G G A T C C T G A A T C G A G T C T A G C C T G A C G T A T A C G A G T C C T A G C A G T T C A G T C G A T G A C G A T C
C A G T A C T G G T A C C T G A A T C G A G C T A T G C C T G A C G A T A T C G A G T C C T A G A C G T C T A G C G T A G T A C T A C G

sv/MA1461.1/Jaspar

Match Rank:4
Score:0.87
Offset:-1
Orientation:forward strand
Alignment:-GCAGCCAAGCGTGACN
CGCAGTCATGCGTGACG
 A C G T A C T G G A T C C T G A A T C G A G T C T A G C C T G A C G T A T A C G A G T C C T A G C A G T T C A G T C G A T G A C G A T C
A G T C A C T G G A T C C T G A A T C G A G C T T A G C C T G A C G A T A T C G A G T C C T A G C A G T C T A G C G T A T G A C T A C G

PAX1/MA0779.1/Jaspar

Match Rank:5
Score:0.87
Offset:-1
Orientation:reverse strand
Alignment:-GCAGCCAAGCGTGACN
NGCANTCATGCGTGACG
 A C G T A C T G G A T C C T G A A T C G A G T C T A G C C T G A C G T A T A C G A G T C C T A G C A G T T C A G T C G A T G A C G A T C
C A G T A C T G G T A C C T G A A T C G A G C T T A G C C T G A C G A T A T C G G A T C C T A G A C G T C T A G C G T A G T A C T A C G

PAX6/MA0069.1/Jaspar

Match Rank:6
Score:0.74
Offset:1
Orientation:reverse strand
Alignment:GCAGCCAAGCGTGACN
-AANTCATGCGTGAA-
 A C T G G A T C C T G A A T C G A G T C T A G C C T G A C G T A T A C G A G T C C T A G C A G T T C A G T C G A T G A C G A T C
A C G T G T C A T C G A A G T C G A C T A T G C C T G A C G A T A T C G G A T C C T A G A C G T C T A G C G T A T C G A A C G T

PAX6(Paired,Homeobox)/Forebrain-Pax6-ChIP-Seq(GSE66961)/Homer

Match Rank:7
Score:0.72
Offset:-5
Orientation:forward strand
Alignment:-----GCAGCCAAGCGTGACN
NGTGTTCAVTSAAGCGKAAA-
 A C G T A C G T A C G T A C G T A C G T A C T G G A T C C T G A A T C G A G T C T A G C C T G A C G T A T A C G A G T C C T A G C A G T T C A G T C G A T G A C G A T C
A G C T T A C G C G A T T C A G A G C T A C G T G A T C C T G A T A G C A G C T A T G C C T G A C G T A A T C G A G T C C T A G A C T G C T G A G T C A T C G A A C G T

PAX5/MA0014.3/Jaspar

Match Rank:8
Score:0.71
Offset:6
Orientation:forward strand
Alignment:GCAGCCAAGCGTGACN--
------GAGCGTGACCCC
 A C T G G A T C C T G A A T C G A G T C T A G C C T G A C G T A T A C G A G T C C T A G C A G T T C A G T C G A T G A C G A T C A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T T C A G C T G A T A C G A G T C T C A G G C A T T A C G C T G A T A G C A G T C G T A C A G T C

prd-PD/dmmpmm(Bergman)/fly

Match Rank:9
Score:0.66
Offset:2
Orientation:reverse strand
Alignment:GCAGCCAAGCGTGACN---
--TGTCAACCGTGACGANA
 A C T G G A T C C T G A A T C G A G T C T A G C C T G A C G T A T A C G A G T C C T A G C A G T T C A G T C G A T G A C G A T C A C G T A C G T A C G T
A C G T A C G T A C G T T A C G A G C T A T G C C T G A C G T A A T G C A G T C A C T G A C G T A C T G C G T A A G T C A T C G C T G A T A C G G T C A

Pax2/MA0067.1/Jaspar

Match Rank:10
Score:0.64
Offset:8
Orientation:reverse strand
Alignment:GCAGCCAAGCGTGACN
--------NCGTGACN
 A C T G G A T C C T G A A T C G A G T C T A G C C T G A C G T A T A C G A G T C C T A G C A G T T C A G T C G A T G A C G A T C
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T T A C G G T A C C T A G A G C T T C A G C G T A G A T C C G A T