Information for Otx2(Homeobox)/EpiLC-Otx2-ChIP-Seq(GSE56098)/Homer (Motif 263)

A T C G G A C T C G A T C G T A C G T A C A G T G A T C G A T C G A T C A G C T
Reverse Opposite:
T C G A C T A G C T A G C T A G G T C A A C G T C G A T C G T A C T G A T A G C
p-value:1e-2790
log p-value:-6.426e+03
FDR:NA
Information Content per bp:1.650
Number of Target Sequences with motif7535.0
Percentage of Target Sequences with motif18.23%
Number of Background Sequences with motif1495.8
Percentage of Background Sequences with motif3.74%
Average Position of motif in Targets51.4 +/- 23.4bp
Average Position of motif in Background49.5 +/- 34.2bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.08
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Otx2(Homeobox)/EpiLC-Otx2-ChIP-Seq(GSE56098)/Homer

Match Rank:1
Score:1.00
Offset:0
Orientation:forward strand
Alignment:NYTAATCCYB
NYTAATCCYB
 A T C G G A C T C G A T C G T A C G T A C A G T G A T C G A T C G A T C A G C T
A T C G G A C T C G A T C G T A C G T A C A G T G A T C G A T C G A T C A G C T

PITX3/MA0714.1/Jaspar

Match Rank:2
Score:0.99
Offset:0
Orientation:forward strand
Alignment:NYTAATCCYB
CTTAATCCC-
 A T C G G A C T C G A T C G T A C G T A C A G T G A T C G A T C G A T C A G C T
T A G C G A C T G C A T C T G A C T G A C A G T G T A C A G T C G A T C A C G T

GSC(Homeobox)/FrogEmbryos-GSC-ChIP-Seq(DRA000576)/Homer

Match Rank:3
Score:0.98
Offset:1
Orientation:reverse strand
Alignment:NYTAATCCYB
-YTAATCCY-
 A T C G G A C T C G A T C G T A C G T A C A G T G A T C G A T C G A T C A G C T
A C G T G A T C G C A T C G T A C G T A A C G T G A T C G A T C A G T C A C G T

PITX1/MA0682.2/Jaspar

Match Rank:4
Score:0.98
Offset:1
Orientation:forward strand
Alignment:NYTAATCCYB
-CTAATCCC-
 A T C G G A C T C G A T C G T A C G T A C A G T G A T C G A T C G A T C A G C T
A C G T G A T C A C G T C G T A C G T A A C G T G T A C A G T C G T A C A C G T

unc-30/MA1443.1/Jaspar

Match Rank:5
Score:0.98
Offset:1
Orientation:forward strand
Alignment:NYTAATCCYB
-TTAATCCC-
 A T C G G A C T C G A T C G T A C G T A C A G T G A T C G A T C G A T C A G C T
A C G T G C A T C G A T C G T A C G T A A C G T G T A C G A T C G A T C A C G T

bcd/dmmpmm(Papatsenko)/fly

Match Rank:6
Score:0.98
Offset:0
Orientation:forward strand
Alignment:NYTAATCCYB
CCTAATCCC-
 A T C G G A C T C G A T C G T A C G T A C A G T G A T C G A T C G A T C A G C T
A T G C G A T C C G A T C T G A C G T A A C G T A G T C A G T C A T G C A C G T

OTX2/MA0712.2/Jaspar

Match Rank:7
Score:0.98
Offset:-1
Orientation:reverse strand
Alignment:-NYTAATCCYB-
NNCTAATCCCNN
 A C G T A T C G G A C T C G A T C G T A C G T A C A G T G A T C G A T C G A T C A G C T A C G T
G C A T G C A T G A T C G C A T C G T A G T C A C A G T G A T C G A T C G A T C G C A T C G A T

oc/dmmpmm(Noyes)/fly

Match Rank:8
Score:0.97
Offset:1
Orientation:forward strand
Alignment:NYTAATCCYB
-TTAATCC--
 A T C G G A C T C G A T C G T A C G T A C A G T G A T C G A T C G A T C A G C T
A C G T G C A T A C G T C G T A C G T A A C G T A T G C A G T C A C G T A C G T

bcd-2/dmmpmm(Noyes)/fly

Match Rank:9
Score:0.97
Offset:1
Orientation:forward strand
Alignment:NYTAATCCYB
-TTAATCC--
 A T C G G A C T C G A T C G T A C G T A C A G T G A T C G A T C G A T C A G C T
A C G T A G C T A C G T C G T A C G T A A C G T A G T C A G T C A C G T A C G T

CRX(Homeobox)/Retina-Crx-ChIP-Seq(GSE20012)/Homer

Match Rank:10
Score:0.97
Offset:0
Orientation:forward strand
Alignment:NYTAATCCYB
GCTAATCC--
 A T C G G A C T C G A T C G T A C G T A C A G T G A T C G A T C G A T C A G C T
A T C G G A T C G C A T C G T A G T C A A C G T A T G C A G T C A C G T A C G T