Information for OCT:OCT(POU,Homeobox)/NPC-OCT6-ChIP-Seq(GSE43916)/Homer (Motif 260)

G A T C C G T A G A C T C T A G G A T C C T G A G A C T C T G A G A C T C T A G G A T C C T G A G A C T C T G A G A C T
Reverse Opposite:
C T G A G A C T C T G A G A C T C T A G G A T C C T G A G A C T C T G A G A C T C T A G G A T C C T G A G C A T C T A G
p-value:1e-267
log p-value:-6.169e+02
FDR:NA
Information Content per bp:1.660
Number of Target Sequences with motif2598.0
Percentage of Target Sequences with motif2.78%
Number of Background Sequences with motif1151.8
Percentage of Background Sequences with motif1.29%
Average Position of motif in Targets50.2 +/- 23.8bp
Average Position of motif in Background49.8 +/- 40.9bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.09
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

OCT:OCT(POU,Homeobox)/NPC-OCT6-ChIP-Seq(GSE43916)/Homer

Match Rank:1
Score:1.00
Offset:0
Orientation:forward strand
Alignment:YATGCATATRCATRT
YATGCATATRCATRT
 G A T C C G T A G A C T C T A G G A T C C T G A G A C T C T G A G A C T C T A G G A T C C T G A G A C T C T G A G A C T
G A T C C G T A G A C T C T A G G A T C C T G A G A C T C T G A G A C T C T A G G A T C C T G A G A C T C T G A G A C T

OCT:OCT(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer

Match Rank:2
Score:0.87
Offset:-2
Orientation:reverse strand
Alignment:--YATGCATATRCATRT
CTCATGAATATTCAT--
 A C G T A C G T G A T C C G T A G A C T C T A G G A T C C T G A G A C T C T G A G A C T C T A G G A T C C T G A G A C T C T G A G A C T
T A G C G A C T G A T C C G T A A C G T T C A G G T C A C G T A A C G T C G T A C G A T A C G T A G T C C G T A C G A T A C G T A C G T

Pit1(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer

Match Rank:3
Score:0.79
Offset:1
Orientation:forward strand
Alignment:YATGCATATRCATRT
-ATGMATATDC----
 G A T C C G T A G A C T C T A G G A T C C T G A G A C T C T G A G A C T C T A G G A T C C T G A G A C T C T G A G A C T
A C G T G C T A A C G T C T A G G T A C G C T A G A C T C T G A G C A T C A T G G A T C A C G T A C G T A C G T A C G T

unc-86/MA0926.1/Jaspar

Match Rank:4
Score:0.74
Offset:1
Orientation:reverse strand
Alignment:YATGCATATRCATRT
-ATGCATAT------
 G A T C C G T A G A C T C T A G G A T C C T G A G A C T C T G A G A C T C T A G G A T C C T G A G A C T C T G A G A C T
A C G T C G T A A C G T A C T G G T A C G T C A A C G T C G T A G A C T A C G T A C G T A C G T A C G T A C G T A C G T

Brn2(POU,Homeobox)/NPC-Brn2-ChIP-Seq(GSE35496)/Homer

Match Rank:5
Score:0.72
Offset:1
Orientation:forward strand
Alignment:YATGCATATRCATRT
-ATGAATATTC----
 G A T C C G T A G A C T C T A G G A T C C T G A G A C T C T G A G A C T C T A G G A T C C T G A G A C T C T G A G A C T
A C G T G C T A A G C T T A C G G T C A C T G A C G A T C T G A G C A T C A G T A G T C A C G T A C G T A C G T A C G T

Top2/dmmpmm(Pollard)/fly

Match Rank:6
Score:0.70
Offset:2
Orientation:reverse strand
Alignment:YATGCATATRCATRT-
--TACATATGTATGTA
 G A T C C G T A G A C T C T A G G A T C C T G A G A C T C T G A G A C T C T A G G A T C C T G A G A C T C T G A G A C T A C G T
A C G T A C G T A C G T C G T A A G T C G T C A A C G T C G T A C G A T A C T G A C G T C G T A A C G T A C T G A C G T C G T A

POU2F2/MA0507.1/Jaspar

Match Rank:7
Score:0.69
Offset:2
Orientation:forward strand
Alignment:YATGCATATRCATRT
--TTCATTTGCATAT
 G A T C C G T A G A C T C T A G G A T C C T G A G A C T C T G A G A C T C T A G G A T C C T G A G A C T C T G A G A C T
A C G T A C G T G A C T C A G T G T A C G C T A A C G T G C A T A C G T C T A G A G T C G T C A A G C T C T G A G C A T

PB0198.1_Zfp128_2/Jaspar

Match Rank:8
Score:0.69
Offset:2
Orientation:forward strand
Alignment:YATGCATATRCATRT-
--TGTATATATATACC
 G A T C C G T A G A C T C T A G G A T C C T G A G A C T C T G A G A C T C T A G G A T C C T G A G A C T C T G A G A C T A C G T
A C G T A C G T C A G T C A T G G C A T C T G A G C A T C T G A G A C T C G T A G A C T C G T A G A C T C G T A T G A C A T G C

Cf2/MA0015.1/Jaspar

Match Rank:9
Score:0.67
Offset:1
Orientation:reverse strand
Alignment:YATGCATATRCATRT
-NTATATATAC----
 G A T C C G T A G A C T C T A G G A T C C T G A G A C T C T G A G A C T C T A G G A T C C T G A G A C T C T G A G A C T
A C G T T C A G G A C T C T G A A G C T C T G A A C G T T C G A A G C T C T G A A G T C A C G T A C G T A C G T A C G T

Cf2/dmmpmm(Bergman)/fly

Match Rank:10
Score:0.67
Offset:2
Orientation:reverse strand
Alignment:YATGCATATRCATRT
--TATATATAC----
 G A T C C G T A G A C T C T A G G A T C C T G A G A C T C T G A G A C T C T A G G A T C C T G A G A C T C T G A G A C T
A C G T A C G T A G C T C T G A G A C T C T G A A G C T T C G A A G C T C T G A A G T C A C G T A C G T A C G T A C G T