Information for OCT:OCT(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer (Motif 259)

G C T A A C G T C T A G G T C A C G T A A C G T C G T A C G A T C A G T A G T C C G T A A C G T C T A G C T G A A T C G
Reverse Opposite:
T A G C G A C T G A T C C G T A A C G T T C A G G T C A C G T A A C G T C G T A C G A T A C G T A G T C C G T A C G A T
p-value:1e-762
log p-value:-1.756e+03
FDR:NA
Information Content per bp:1.740
Number of Target Sequences with motif370.0
Percentage of Target Sequences with motif21.09%
Number of Background Sequences with motif33.1
Percentage of Background Sequences with motif0.08%
Average Position of motif in Targets51.5 +/- 15.7bp
Average Position of motif in Background51.5 +/- 48.8bp
Strand Bias (log2 ratio + to - strand density)0.1
Multiplicity (# of sites on avg that occur together)1.03
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

OCT:OCT(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer

Match Rank:1
Score:1.00
Offset:0
Orientation:forward strand
Alignment:ATGAATATTCATGAG
ATGAATATTCATGAG
 G C T A A C G T C T A G G T C A C G T A A C G T C G T A C G A T C A G T A G T C C G T A A C G T C T A G C T G A A T C G
G C T A A C G T C T A G G T C A C G T A A C G T C G T A C G A T C A G T A G T C C G T A A C G T C T A G C T G A A T C G

OCT:OCT(POU,Homeobox)/NPC-OCT6-ChIP-Seq(GSE43916)/Homer

Match Rank:2
Score:0.87
Offset:-2
Orientation:reverse strand
Alignment:--ATGAATATTCATGAG
AYATGYATATGCATR--
 A C G T A C G T G C T A A C G T C T A G G T C A C G T A A C G T C G T A C G A T C A G T A G T C C G T A A C G T C T A G C T G A A T C G
C T G A G A C T C T G A G A C T C T A G G A T C C T G A G A C T C T G A G A C T C T A G G A T C C T G A G C A T C T A G A C G T A C G T

Brn2(POU,Homeobox)/NPC-Brn2-ChIP-Seq(GSE35496)/Homer

Match Rank:3
Score:0.84
Offset:2
Orientation:reverse strand
Alignment:ATGAATATTCATGAG
--GAATATTCAT---
 G C T A A C G T C T A G G T C A C G T A A C G T C G T A C G A T C A G T A G T C C G T A A C G T C T A G C T G A A T C G
A C G T A C G T T C A G G T C A C G T A A G C T C G T A G A C T C A G T A T G C T C G A C G A T A C G T A C G T A C G T

Pit1(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer

Match Rank:4
Score:0.84
Offset:0
Orientation:forward strand
Alignment:ATGAATATTCATGAG
ATGMATATDC-----
 G C T A A C G T C T A G G T C A C G T A A C G T C G T A C G A T C A G T A G T C C G T A A C G T C T A G C T G A A T C G
G C T A A C G T C T A G G T A C G C T A G A C T C T G A G C A T C A T G G A T C A C G T A C G T A C G T A C G T A C G T

unc-86/MA0926.1/Jaspar

Match Rank:5
Score:0.73
Offset:4
Orientation:forward strand
Alignment:ATGAATATTCATGAG
----ATATGCAT---
 G C T A A C G T C T A G G T C A C G T A A C G T C G T A C G A T C A G T A G T C C G T A A C G T C T A G C T G A A T C G
A C G T A C G T A C G T A C G T C G T A A C G T C G T A A C G T A C T G G T A C C G T A A C G T A C G T A C G T A C G T

KAN4/MA1028.1/Jaspar

Match Rank:6
Score:0.73
Offset:2
Orientation:forward strand
Alignment:ATGAATATTCATGAG
--GAATATTC-----
 G C T A A C G T C T A G G T C A C G T A A C G T C G T A C G A T C A G T A G T C C G T A A C G T C T A G C T G A A T C G
A C G T A C G T C A T G C T G A C G T A A G C T T C G A C G A T G A C T G T A C A C G T A C G T A C G T A C G T A C G T

At2g03500(G2like)/col-At2g03500-DAP-Seq(GSE60143)/Homer

Match Rank:7
Score:0.72
Offset:-1
Orientation:forward strand
Alignment:-ATGAATATTCATGAG
WWAGAATATTCT----
 A C G T G C T A A C G T C T A G G T C A C G T A A C G T C G T A C G A T C A G T A G T C C G T A A C G T C T A G C T G A A T C G
C G T A C G T A C T G A A C T G C G T A C G T A A C G T G T C A A C G T G C A T A G T C G A C T A C G T A C G T A C G T A C G T

AT2G20400(G2like)/colamp-AT2G20400-DAP-Seq(GSE60143)/Homer

Match Rank:8
Score:0.70
Offset:-1
Orientation:forward strand
Alignment:-ATGAATATTCATGAG
DNVGAATATTCBNHN-
 A C G T G C T A A C G T C T A G G T C A C G T A A C G T C G T A C G A T C A G T A G T C C G T A A C G T C T A G C T G A A T C G
C G T A C G T A T C G A A C T G C G T A C G T A A C G T C G T A A C G T C G A T A G T C A G C T G C A T G C A T C G A T A C G T

EFM/MA1167.1/Jaspar

Match Rank:9
Score:0.69
Offset:1
Orientation:forward strand
Alignment:ATGAATATTCATGAG
-AGAATATTCCA---
 G C T A A C G T C T A G G T C A C G T A A C G T C G T A C G A T C A G T A G T C C G T A A C G T C T A G C T G A A T C G
A C G T C T G A A C T G C G T A C G T A A C G T G T C A G A C T G C A T G A T C A G T C C T G A A C G T A C G T A C G T

vvl/dmmpmm(Bigfoot)/fly

Match Rank:10
Score:0.69
Offset:1
Orientation:reverse strand
Alignment:ATGAATATTCATGAG
-TGAATA--------
 G C T A A C G T C T A G G T C A C G T A A C G T C G T A C G A T C A G T A G T C C G T A A C G T C T A G C T G A A T C G
A C G T A C G T T C A G G T C A C G T A A C G T C G T A A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T