Information for Oct4:Sox17(POU,Homeobox,HMG)/F9-Sox17-ChIP-Seq(GSE44553)/Homer (Motif 255)

A G T C G A T C G C T A C G A T A C G T T A C G G C A T C T G A G A C T A C T G A G T C G C T A C T G A T C G A C A G T
Reverse Opposite:
G T C A A G C T G A C T C G A T T C A G T G A C C G T A G A C T C G T A A T G C C G T A C G T A C G A T C T A G T C A G
p-value:1e-342
log p-value:-7.893e+02
FDR:NA
Information Content per bp:1.675
Number of Target Sequences with motif287.0
Percentage of Target Sequences with motif11.61%
Number of Background Sequences with motif137.8
Percentage of Background Sequences with motif0.30%
Average Position of motif in Targets48.1 +/- 19.5bp
Average Position of motif in Background52.7 +/- 28.2bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.05
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Oct4:Sox17(POU,Homeobox,HMG)/F9-Sox17-ChIP-Seq(GSE44553)/Homer

Match Rank:1
Score:1.00
Offset:0
Orientation:forward strand
Alignment:CCATTGTATGCAAAT
CCATTGTATGCAAAT
 A G T C G A T C G C T A C G A T A C G T T A C G G C A T C T G A G A C T A C T G A G T C G C T A C T G A T C G A C A G T
A G T C G A T C G C T A C G A T A C G T T A C G G C A T C T G A G A C T A C T G A G T C G C T A C T G A T C G A C A G T

PB0168.1_Sox14_2/Jaspar

Match Rank:2
Score:0.77
Offset:-3
Orientation:reverse strand
Alignment:---CCATTGTATGCAAAT
NNNCCATTGTGTNAN---
 A C G T A C G T A C G T A G T C G A T C G C T A C G A T A C G T T A C G G C A T C T G A G A C T A C T G A G T C G C T A C T G A T C G A C A G T
A T C G T G A C A C T G A G T C G A T C C G T A A C G T A C G T T A C G G C A T A T C G A G C T T C A G T G C A T C A G A C G T A C G T A C G T

SOX2/MA0143.4/Jaspar

Match Rank:3
Score:0.75
Offset:-2
Orientation:reverse strand
Alignment:--CCATTGTATGCAAAT
NNCCATTGTNN------
 A C G T A C G T A G T C G A T C G C T A C G A T A C G T T A C G G C A T C T G A G A C T A C T G A G T C G C T A C T G A T C G A C A G T
C G A T G C A T G A T C G A T C G C T A A G C T C G A T C T A G C G A T G C A T G C A T A C G T A C G T A C G T A C G T A C G T A C G T

Sox17(HMG)/Endoderm-Sox17-ChIP-Seq(GSE61475)/Homer

Match Rank:4
Score:0.74
Offset:0
Orientation:forward strand
Alignment:CCATTGTATGCAAAT
CCATTGTTYB-----
 A G T C G A T C G C T A C G A T A C G T T A C G G C A T C T G A G A C T A C T G A G T C G C T A C T G A T C G A C A G T
A T G C G A T C C G T A A G C T C A G T A T C G G C A T A G C T G A C T A C T G A C G T A C G T A C G T A C G T A C G T

SOX13/MA1120.1/Jaspar

Match Rank:5
Score:0.74
Offset:-2
Orientation:reverse strand
Alignment:--CCATTGTATGCAAAT
NNCCATTGTNN------
 A C G T A C G T A G T C G A T C G C T A C G A T A C G T T A C G G C A T C T G A G A C T A C T G A G T C G C T A C T G A T C G A C A G T
C G A T A C T G A G T C G A T C C G T A G A C T C G A T T C A G G A C T A G C T G A C T A C G T A C G T A C G T A C G T A C G T A C G T

PH0145.1_Pou2f3/Jaspar

Match Rank:6
Score:0.74
Offset:3
Orientation:forward strand
Alignment:CCATTGTATGCAAAT----
---TTGTATGCAAATTAGA
 A G T C G A T C G C T A C G A T A C G T T A C G G C A T C T G A G A C T A C T G A G T C G C T A C T G A T C G A C A G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T G C A T C A T G G A C T C G T A A G C T A C T G A G T C C G T A C G T A C G T A C A G T A C G T G T C A C T A G T G C A

SOX15/MA1152.1/Jaspar

Match Rank:7
Score:0.74
Offset:0
Orientation:forward strand
Alignment:CCATTGTATGCAAAT
CTATTGTTTT-----
 A G T C G A T C G C T A C G A T A C G T T A C G G C A T C T G A G A C T A C T G A G T C G C T A C T G A T C G A C A G T
A G T C G A C T C G T A A C G T C G A T T C A G C G A T G A C T G A C T G C A T A C G T A C G T A C G T A C G T A C G T

Sox15(HMG)/CPA-Sox15-ChIP-Seq(GSE62909)/Homer

Match Rank:8
Score:0.74
Offset:-1
Orientation:reverse strand
Alignment:-CCATTGTATGCAAAT
NCCATTGTTY------
 A C G T A G T C G A T C G C T A C G A T A C G T T A C G G C A T C T G A G A C T A C T G A G T C G C T A C T G A T C G A C A G T
C T A G A G T C G A T C G C T A C G A T A C G T A T C G A C G T A G C T G A C T A C G T A C G T A C G T A C G T A C G T A C G T

PH0144.1_Pou2f2/Jaspar

Match Rank:9
Score:0.72
Offset:3
Orientation:forward strand
Alignment:CCATTGTATGCAAAT----
---TTGTATGCAAATTAGA
 A G T C G A T C G C T A C G A T A C G T T A C G G C A T C T G A G A C T A C T G A G T C G C T A C T G A T C G A C A G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A G C T G C A T C A T G G C A T C G T A A G C T C A T G A G T C C G T A C G T A C G T A C G A T C A G T G C T A C T A G T G C A

Sox10(HMG)/SciaticNerve-Sox3-ChIP-Seq(GSE35132)/Homer

Match Rank:10
Score:0.71
Offset:0
Orientation:forward strand
Alignment:CCATTGTATGCAAAT
CCWTTGTYYB-----
 A G T C G A T C G C T A C G A T A C G T T A C G G C A T C T G A G A C T A C T G A G T C G C T A C T G A T C G A C A G T
A T G C A G T C G C A T A G C T A C G T T C A G C G A T A G C T G A T C A T C G A C G T A C G T A C G T A C G T A C G T