Information for NPAS2(bHLH)/Liver-NPAS2-ChIP-Seq(GSE39860)/Homer (Motif 243)

A C T G T G A C G T A C C G T A A G T C T A C G A C G T A C T G G T C A A G T C
Reverse Opposite:
T C A G C A G T A G T C C G T A A T G C T C A G G C A T A C T G A C T G T G A C
p-value:1e-241
log p-value:-5.571e+02
FDR:NA
Information Content per bp:1.708
Number of Target Sequences with motif585.0
Percentage of Target Sequences with motif38.39%
Number of Background Sequences with motif3424.3
Percentage of Background Sequences with motif7.81%
Average Position of motif in Targets0 +/- 0bp
Average Position of motif in Background0 +/- 0bp
Strand Bias (log2 ratio + to - strand density)0
Multiplicity (# of sites on avg that occur together)1
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NPAS2(bHLH)/Liver-NPAS2-ChIP-Seq(GSE39860)/Homer

Match Rank:1
Score:1.00
Offset:0
Orientation:forward strand
Alignment:KCCACGTGAC
KCCACGTGAC
 A C T G T G A C G T A C C G T A A G T C T A C G A C G T A C T G G T C A A G T C
A C T G T G A C G T A C C G T A A G T C T A C G A C G T A C T G G T C A A G T C

PIF3/MA0560.1/Jaspar

Match Rank:2
Score:0.96
Offset:-1
Orientation:forward strand
Alignment:-KCCACGTGAC
AGCCACGTGA-
 A C G T A C T G T G A C G T A C C G T A A G T C T A C G A C G T A C T G G T C A A G T C
C T G A A T C G T A G C A G T C C G T A A G T C A C T G A C G T A C T G C T G A A C G T

PIF4/MA0561.1/Jaspar

Match Rank:3
Score:0.95
Offset:0
Orientation:reverse strand
Alignment:KCCACGTGAC
GCCACGTG--
 A C T G T G A C G T A C C G T A A G T C T A C G A C G T A C T G G T C A A G T C
A T C G T A G C A G T C C G T A A G T C A C T G A C G T A C T G A C G T A C G T

PIF5/MA0562.1/Jaspar

Match Rank:4
Score:0.95
Offset:1
Orientation:reverse strand
Alignment:KCCACGTGAC
-CCACGTGA-
 A C T G T G A C G T A C C G T A A G T C T A C G A C G T A C T G G T C A A G T C
A C G T T A G C A G T C C G T A A G T C A C T G A C G T A C T G C T G A A C G T

nuc-1/MA1436.1/Jaspar

Match Rank:5
Score:0.95
Offset:1
Orientation:forward strand
Alignment:KCCACGTGAC
-CCACGTGC-
 A C T G T G A C G T A C C G T A A G T C T A C G A C G T A C T G G T C A A G T C
A C G T G T A C A G T C G T C A A G T C A C T G A C G T A C T G G T A C A C G T

Usf2(bHLH)/C2C12-Usf2-ChIP-Seq(GSE36030)/Homer

Match Rank:6
Score:0.94
Offset:0
Orientation:reverse strand
Alignment:KCCACGTGAC
ACCACGTGAC
 A C T G T G A C G T A C C G T A A G T C T A C G A C G T A C T G G T C A A G T C
T C G A G A T C A G T C C G T A A G T C T C A G A G C T A C T G T G C A A G T C

UNE10/MA1074.1/Jaspar

Match Rank:7
Score:0.94
Offset:1
Orientation:forward strand
Alignment:KCCACGTGAC
-CCACGTGC-
 A C T G T G A C G T A C C G T A A G T C T A C G A C G T A C T G G T C A A G T C
A C G T G A T C A G T C C G T A A G T C A C T G A C G T A C T G G T A C A C G T

PHO4(MacIsaac)/Yeast

Match Rank:8
Score:0.94
Offset:1
Orientation:reverse strand
Alignment:KCCACGTGAC
-CCACGTG--
 A C T G T G A C G T A C C G T A A G T C T A C G A C G T A C T G G T C A A G T C
A C G T A T G C A G T C C T G A A G T C C T A G A G C T C T A G A C G T A C G T

BMAL1(bHLH)/Liver-Bmal1-ChIP-Seq(GSE39860)/Homer

Match Rank:9
Score:0.94
Offset:2
Orientation:reverse strand
Alignment:KCCACGTGAC
--CACGTGNC
 A C T G T G A C G T A C C G T A A G T C T A C G A C G T A C T G G T C A A G T C
A C G T A C G T G T A C C T G A A G T C C T A G G C A T A C T G G T C A G A T C

CLOCK(bHLH)/Liver-Clock-ChIP-Seq(GSE39860)/Homer

Match Rank:10
Score:0.94
Offset:2
Orientation:reverse strand
Alignment:KCCACGTGAC
--CACGTGDC
 A C T G T G A C G T A C C G T A A G T C T A C G A C G T A C T G G T C A A G T C
A C G T A C G T G A T C C T G A A G T C C T A G G C A T C T A G C G T A G A T C