Information for Nkx3.1(Homeobox)/LNCaP-Nkx3.1-ChIP-Seq(GSE28264)/Homer (Motif 240)

T C G A T C G A T A C G G A T C G T C A G T A C C G A T A G C T G T C A T G C A
Reverse Opposite:
A C G T C A G T T C G A C G T A A C T G A C G T C T A G A T G C A G C T A G C T
p-value:1e-94
log p-value:-2.166e+02
FDR:NA
Information Content per bp:1.660
Number of Target Sequences with motif616.0
Percentage of Target Sequences with motif30.37%
Number of Background Sequences with motif5784.7
Percentage of Background Sequences with motif12.85%
Average Position of motif in Targets0 +/- 0bp
Average Position of motif in Background0 +/- 0bp
Strand Bias (log2 ratio + to - strand density)0
Multiplicity (# of sites on avg that occur together)1
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Nkx3.1(Homeobox)/LNCaP-Nkx3.1-ChIP-Seq(GSE28264)/Homer

Match Rank:1
Score:1.00
Offset:0
Orientation:forward strand
Alignment:AAGCACTTAA
AAGCACTTAA
 T C G A T C G A T A C G G A T C G T C A G T A C C G A T A G C T G T C A T G C A
T C G A T C G A T A C G G A T C G T C A G T A C C G A T A G C T G T C A T G C A

Bapx1(Homeobox)/VertebralCol-Bapx1-ChIP-Seq(GSE36672)/Homer

Match Rank:2
Score:0.91
Offset:0
Orientation:reverse strand
Alignment:AAGCACTTAA
MRSCACTYAA
 T C G A T C G A T A C G G A T C G T C A G T A C C G A T A G C T G T C A T G C A
G T C A C T G A T A G C A G T C C G T A G T A C G C A T A G T C C T G A T C G A

Nkx2.5(Homeobox)/HL1-Nkx2.5.biotin-ChIP-Seq(GSE21529)/Homer

Match Rank:3
Score:0.88
Offset:0
Orientation:forward strand
Alignment:AAGCACTTAA
AASCACTCAA
 T C G A T C G A T A C G G A T C G T C A G T A C C G A T A G C T G T C A T G C A
C T G A C T G A T A G C G A T C G C T A G T A C A C G T G A T C T G C A C G T A

Nkx3-1/MA0124.2/Jaspar

Match Rank:4
Score:0.88
Offset:1
Orientation:forward strand
Alignment:AAGCACTTAA
-ACCACTTAA
 T C G A T C G A T A C G G A T C G T C A G T A C C G A T A G C T G T C A T G C A
A C G T T C G A T A G C A G T C G C T A G T A C A G C T A G C T G C T A C T G A

Nkx3-2/MA0122.3/Jaspar

Match Rank:5
Score:0.87
Offset:-2
Orientation:forward strand
Alignment:--AAGCACTTAA-
ATAACCACTTAAA
 A C G T A C G T T C G A T C G A T A C G G A T C G T C A G T A C C G A T A G C T G T C A T G C A A C G T
C G T A C G A T C G T A C G T A T G A C G A T C G C T A G T A C G C A T G A C T G C T A C G T A G C T A

ISL2/MA0914.1/Jaspar

Match Rank:6
Score:0.86
Offset:2
Orientation:forward strand
Alignment:AAGCACTTAA
--GCACTTAA
 T C G A T C G A T A C G G A T C G T C A G T A C C G A T A G C T G T C A T G C A
A C G T A C G T T A C G G A T C G C T A G T A C C G A T G A C T G C T A C T G A

Nkx2.1(Homeobox)/LungAC-Nkx2.1-ChIP-Seq(GSE43252)/Homer

Match Rank:7
Score:0.86
Offset:1
Orientation:forward strand
Alignment:AAGCACTTAA-
-RSCACTYRAG
 T C G A T C G A T A C G G A T C G T C A G T A C C G A T A G C T G T C A T G C A A C G T
A C G T C T A G T A C G A G T C C G T A A G T C A C G T A G T C T C G A C G T A T A C G

PH0004.1_Nkx3-2/Jaspar

Match Rank:8
Score:0.85
Offset:-3
Orientation:forward strand
Alignment:---AAGCACTTAA----
CATAACCACTTAACAAC
 A C G T A C G T A C G T T C G A T C G A T A C G G A T C G T C A G T A C C G A T A G C T G T C A T G C A A C G T A C G T A C G T A C G T
T G A C G C T A C G A T T C G A G C T A T A G C A G T C C G T A G T A C A G C T A G C T G C T A C G T A T A G C T G C A G T C A G A T C

bap/dmmpmm(Noyes_hd)/fly

Match Rank:9
Score:0.83
Offset:2
Orientation:reverse strand
Alignment:AAGCACTTAA--
--NCACTTAANN
 T C G A T C G A T A C G G A T C G T C A G T A C C G A T A G C T G T C A T G C A A C G T A C G T
A C G T A C G T A T G C A G T C C G T A A G T C A C G T A C G T C G T A G T C A T C A G C G T A

bap/MA0211.1/Jaspar

Match Rank:10
Score:0.83
Offset:3
Orientation:reverse strand
Alignment:AAGCACTTAA
---CACTTAA
 T C G A T C G A T A C G G A T C G T C A G T A C C G A T A G C T G T C A T G C A
A C G T A C G T A C G T A G T C C G T A A G T C A C G T A C G T C G T A G T C A