Information for Nkx2.5(Homeobox)/HL1-Nkx2.5.biotin-ChIP-Seq(GSE21529)/Homer (Motif 239)

C T G A C T G A T A G C G A T C G C T A G T A C A C G T G A T C T G C A C G T A
Reverse Opposite:
G C A T A C G T C T A G C G T A C A T G C G A T C T A G A T C G G A C T G A C T
p-value:1e-1998
log p-value:-4.609e+03
FDR:NA
Information Content per bp:1.588
Number of Target Sequences with motif11212.0
Percentage of Target Sequences with motif56.23%
Number of Background Sequences with motif7132.4
Percentage of Background Sequences with motif24.37%
Average Position of motif in Targets0 +/- 0bp
Average Position of motif in Background0 +/- 0bp
Strand Bias (log2 ratio + to - strand density)0
Multiplicity (# of sites on avg that occur together)1
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Nkx2.5(Homeobox)/HL1-Nkx2.5.biotin-ChIP-Seq(GSE21529)/Homer

Match Rank:1
Score:1.00
Offset:0
Orientation:forward strand
Alignment:AASCACTCAA
AASCACTCAA
 C T G A C T G A T A G C G A T C G C T A G T A C A C G T G A T C T G C A C G T A
C T G A C T G A T A G C G A T C G C T A G T A C A C G T G A T C T G C A C G T A

Nkx2.1(Homeobox)/LungAC-Nkx2.1-ChIP-Seq(GSE43252)/Homer

Match Rank:2
Score:0.97
Offset:1
Orientation:forward strand
Alignment:AASCACTCAA-
-RSCACTYRAG
 C T G A C T G A T A G C G A T C G C T A G T A C A C G T G A T C T G C A C G T A A C G T
A C G T C T A G T A C G A G T C C G T A A G T C A C G T A G T C T C G A C G T A T A C G

Nkx2.2(Homeobox)/NPC-Nkx2.2-ChIP-Seq(GSE61673)/Homer

Match Rank:3
Score:0.97
Offset:1
Orientation:reverse strand
Alignment:AASCACTCAA-
-NSCACTYVAV
 C T G A C T G A T A G C G A T C G C T A G T A C A C G T G A T C T G C A C G T A A C G T
A C G T C T A G T A G C A G T C G C T A G A T C A C G T G A T C T C G A C T G A T A C G

Bapx1(Homeobox)/VertebralCol-Bapx1-ChIP-Seq(GSE36672)/Homer

Match Rank:4
Score:0.94
Offset:0
Orientation:reverse strand
Alignment:AASCACTCAA
MRSCACTYAA
 C T G A C T G A T A G C G A T C G C T A G T A C A C G T G A T C T G C A C G T A
G T C A C T G A T A G C A G T C C G T A G T A C G C A T A G T C C T G A T C G A

Nkx2-5(var.2)/MA0503.1/Jaspar

Match Rank:5
Score:0.92
Offset:0
Orientation:forward strand
Alignment:AASCACTCAA-
AGCCACTCAAG
 C T G A C T G A T A G C G A T C G C T A G T A C A C G T G A T C T G C A C G T A A C G T
C T G A C T A G T A G C A G T C G C T A A G T C A C G T A G T C G T C A C T G A T A C G

NKX2-5/MA0063.2/Jaspar

Match Rank:6
Score:0.90
Offset:1
Orientation:forward strand
Alignment:AASCACTCAA--
-ACCACTCAAAA
 C T G A C T G A T A G C G A T C G C T A G T A C A C G T G A T C T G C A C G T A A C G T A C G T
A C G T T C G A T G A C G A T C C T G A G A T C G C A T G A T C C G T A G C T A T C G A G C T A

NKX2-8/MA0673.1/Jaspar

Match Rank:7
Score:0.90
Offset:2
Orientation:forward strand
Alignment:AASCACTCAA-
--CCACTTGAA
 C T G A C T G A T A G C G A T C G C T A G T A C A C G T G A T C T G C A C G T A A C G T
A C G T A C G T T A G C G A T C G T C A G A T C A G C T G A C T T A C G G C T A T C G A

NKX2-2/MA1645.1/Jaspar

Match Rank:8
Score:0.89
Offset:-1
Orientation:forward strand
Alignment:-AASCACTCAA---
TAACCACTCAAGAA
 A C G T C T G A C T G A T A G C G A T C G C T A G T A C A C G T G A T C T G C A C G T A A C G T A C G T A C G T
G A C T G C T A C G T A T G A C G A T C G C T A G T A C G C A T A T G C G T C A T C G A T C A G G C T A G C T A

NKX2-3/MA0672.1/Jaspar

Match Rank:9
Score:0.89
Offset:1
Orientation:forward strand
Alignment:AASCACTCAA-
-ACCACTTGAA
 C T G A C T G A T A G C G A T C G C T A G T A C A C G T G A T C T G C A C G T A A C G T
A C G T T G C A T A G C G A T C G C T A G T A C A C G T A G C T T C A G C G T A T C G A

Nkx3.1(Homeobox)/LNCaP-Nkx3.1-ChIP-Seq(GSE28264)/Homer

Match Rank:10
Score:0.88
Offset:0
Orientation:forward strand
Alignment:AASCACTCAA
AAGCACTTAA
 C T G A C T G A T A G C G A T C G C T A G T A C A C G T G A T C T G C A C G T A
T C G A T C G A T A C G G A T C G T C A G T A C C G A T A G C T G T C A T G C A