Information for Nkx2.1(Homeobox)/LungAC-Nkx2.1-ChIP-Seq(GSE43252)/Homer (Motif 237)

C T A G T A C G A G T C C G T A A G T C A C G T A G T C T C G A C G T A T A C G
Reverse Opposite:
A T G C G C A T A G C T C T A G C G T A A C T G C G A T C T A G A T G C G A T C
p-value:1e-1512
log p-value:-3.482e+03
FDR:NA
Information Content per bp:1.625
Number of Target Sequences with motif10352.0
Percentage of Target Sequences with motif39.07%
Number of Background Sequences with motif4508.3
Percentage of Background Sequences with motif17.36%
Average Position of motif in Targets0 +/- 0bp
Average Position of motif in Background0 +/- 0bp
Strand Bias (log2 ratio + to - strand density)0
Multiplicity (# of sites on avg that occur together)1
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Nkx2.1(Homeobox)/LungAC-Nkx2.1-ChIP-Seq(GSE43252)/Homer

Match Rank:1
Score:1.00
Offset:0
Orientation:forward strand
Alignment:RSCACTYRAG
RSCACTYRAG
 C T A G T A C G A G T C C G T A A G T C A C G T A G T C T C G A C G T A T A C G
C T A G T A C G A G T C C G T A A G T C A C G T A G T C T C G A C G T A T A C G

Nkx2.5(Homeobox)/HL1-Nkx2.5.biotin-ChIP-Seq(GSE21529)/Homer

Match Rank:2
Score:0.97
Offset:-1
Orientation:forward strand
Alignment:-RSCACTYRAG
AASCACTCAA-
 A C G T C T A G T A C G A G T C C G T A A G T C A C G T A G T C T C G A C G T A T A C G
C T G A C T G A T A G C G A T C G C T A G T A C A C G T G A T C T G C A C G T A A C G T

Nkx2.2(Homeobox)/NPC-Nkx2.2-ChIP-Seq(GSE61673)/Homer

Match Rank:3
Score:0.97
Offset:0
Orientation:reverse strand
Alignment:RSCACTYRAG
NSCACTYVAV
 C T A G T A C G A G T C C G T A A G T C A C G T A G T C T C G A C G T A T A C G
C T A G T A G C A G T C G C T A G A T C A C G T G A T C T C G A C T G A T A C G

NKX2-8/MA0673.1/Jaspar

Match Rank:4
Score:0.94
Offset:1
Orientation:forward strand
Alignment:RSCACTYRAG
-CCACTTGAA
 C T A G T A C G A G T C C G T A A G T C A C G T A G T C T C G A C G T A T A C G
A C G T T A G C G A T C G T C A G A T C A G C T G A C T T A C G G C T A T C G A

Bapx1(Homeobox)/VertebralCol-Bapx1-ChIP-Seq(GSE36672)/Homer

Match Rank:5
Score:0.93
Offset:-1
Orientation:reverse strand
Alignment:-RSCACTYRAG
MRSCACTYAA-
 A C G T C T A G T A C G A G T C C G T A A G T C A C G T A G T C T C G A C G T A T A C G
G T C A C T G A T A G C A G T C C G T A G T A C G C A T A G T C C T G A T C G A A C G T

NKX2-3/MA0672.1/Jaspar

Match Rank:6
Score:0.91
Offset:0
Orientation:forward strand
Alignment:RSCACTYRAG
ACCACTTGAA
 C T A G T A C G A G T C C G T A A G T C A C G T A G T C T C G A C G T A T A C G
T G C A T A G C G A T C G C T A G T A C A C G T A G C T T C A G C G T A T C G A

NKX2-5/MA0063.2/Jaspar

Match Rank:7
Score:0.89
Offset:0
Orientation:forward strand
Alignment:RSCACTYRAG-
ACCACTCAAAA
 C T A G T A C G A G T C C G T A A G T C A C G T A G T C T C G A C G T A T A C G A C G T
T C G A T G A C G A T C C T G A G A T C G C A T G A T C C G T A G C T A T C G A G C T A

vnd/dmmpmm(Bergman)/fly

Match Rank:8
Score:0.89
Offset:-2
Orientation:reverse strand
Alignment:--RSCACTYRAG--
NNNCCACTTNACAN
 A C G T A C G T C T A G T A C G A G T C C G T A A G T C A C G T A G T C T C G A C G T A T A C G A C G T A C G T
T G A C G T C A T C A G T A G C G A T C C T G A T A G C A C G T A G C T T C G A G C T A G T A C C G T A G A C T

Nkx2-5(var.2)/MA0503.1/Jaspar

Match Rank:9
Score:0.89
Offset:-1
Orientation:forward strand
Alignment:-RSCACTYRAG
AGCCACTCAAG
 A C G T C T A G T A C G A G T C C G T A A G T C A C G T A G T C T C G A C G T A T A C G
C T G A C T A G T A G C A G T C G C T A A G T C A C G T A G T C G T C A C T G A T A C G

tin/MA0247.2/Jaspar

Match Rank:10
Score:0.89
Offset:1
Orientation:reverse strand
Alignment:RSCACTYRAG-
-CCACTTGANA
 C T A G T A C G A G T C C G T A A G T C A C G T A G T C T C G A C G T A T A C G A C G T
A C G T T A G C A G T C C G T A A G T C A C G T A G C T T C A G C T G A T C G A G C T A