Information for NFkB-p65-Rel(RHD)/ThioMac-LPS-Expression(GSE23622)/Homer (Motif 235)

A C T G C A T G G C T A T C G A G C T A A G C T A G C T G T A C A G T C T G A C
Reverse Opposite:
A C T G C T A G A C T G C T G A T C G A C G A T A G C T C G A T G T A C G T A C
p-value:
log p-value:-9.602e+01
FDR:0.000
Information Content per bp:1.852
Number of Target Sequences with motif
Percentage of Target Sequences with motif
Number of Background Sequences with motif
Percentage of Background Sequences with motif
Average Position of motif in Targets0 +/- 0bp
Average Position of motif in Background0 +/- 0bp
Strand Bias (log2 ratio + to - strand density)0
Multiplicity (# of sites on avg that occur together)1
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NFkB-p65-Rel(RHD)/ThioMac-LPS-Expression(GSE23622)/Homer

Match Rank:1
Score:1.00
Offset:0
Orientation:forward strand
Alignment:GGAAATTCCC
GGAAATTCCC
 A C T G C A T G G C T A T C G A G C T A A G C T A G C T G T A C A G T C T G A C
A C T G C A T G G C T A T C G A G C T A A G C T A G C T G T A C A G T C T G A C

RELA/MA0107.1/Jaspar

Match Rank:2
Score:0.97
Offset:0
Orientation:reverse strand
Alignment:GGAAATTCCC
GGAAATTCCC
 A C T G C A T G G C T A T C G A G C T A A G C T A G C T G T A C A G T C T G A C
A C T G A C T G C T G A C G T A C G T A A G C T A G C T A G T C G T A C T A G C

MF0003.1_REL_class/Jaspar

Match Rank:3
Score:0.92
Offset:0
Orientation:reverse strand
Alignment:GGAAATTCCC
GGAAATCCCC
 A C T G C A T G G C T A T C G A G C T A A G C T A G C T G T A C A G T C T G A C
C A T G C T A G C T G A T C G A G C T A C G A T G A T C G T A C T G A C T A G C

NFkB-p65(RHD)/GM12787-p65-ChIP-Seq(GSE19485)/Homer

Match Rank:4
Score:0.91
Offset:-1
Orientation:reverse strand
Alignment:-GGAAATTCCC-
GGGAAATCCCCN
 A C G T A C T G C A T G G C T A T C G A G C T A A G C T A G C T G T A C A G T C T G A C A C G T
C A T G C T A G C T A G C T G A G C T A C G T A A G C T G A T C G T A C G T A C G T A C G C A T

REL/MA0101.1/Jaspar

Match Rank:5
Score:0.90
Offset:0
Orientation:reverse strand
Alignment:GGAAATTCCC
GGAAANCCCC
 A C T G C A T G G C T A T C G A G C T A A G C T A G C T G T A C A G T C T G A C
A C T G C T A G C G T A C G T A C G T A A C G T G A T C G A T C T A G C T A G C

dl/dmmpmm(Papatsenko)/fly

Match Rank:6
Score:0.88
Offset:0
Orientation:reverse strand
Alignment:GGAAATTCCC
GGGAAATCCC
 A C T G C A T G G C T A T C G A G C T A A G C T A G C T G T A C A G T C T G A C
T A C G A C T G T C A G T C G A C G T A G C T A G A C T A G T C T G A C T G A C

dl(var.2)/MA0023.1/Jaspar

Match Rank:7
Score:0.84
Offset:0
Orientation:reverse strand
Alignment:GGAAATTCCC
GGAAAACCCC
 A C T G C A T G G C T A T C G A G C T A A G C T A G C T G T A C A G T C T G A C
A C T G A C T G C T G A C G T A C G T A C G A T G T A C A G T C G T A C T A G C

dl-A/dmmpmm(Bergman)/fly

Match Rank:8
Score:0.83
Offset:-1
Orientation:reverse strand
Alignment:-GGAAATTCCC
NGGAAAAACCC
 A C G T A C T G C A T G G C T A T C G A G C T A A G C T A G C T G T A C A G T C T G A C
A T C G A C T G A C T G C G T A C G T A C G T A C G T A C G T A A G T C A G T C T A G C

dl/dmmpmm(Down)/fly

Match Rank:9
Score:0.83
Offset:0
Orientation:reverse strand
Alignment:GGAAATTCCC
GGAAAATCCA
 A C T G C A T G G C T A T C G A G C T A A G C T A G C T G T A C A G T C T G A C
T C A G T C A G T C G A G T C A C G T A C G T A A G C T G T A C T A G C T C G A

dl/dmmpmm(Pollard)/fly

Match Rank:10
Score:0.82
Offset:-1
Orientation:reverse strand
Alignment:-GGAAATTCCC
GGGAAAATCC-
 A C G T A C T G C A T G G C T A T C G A G C T A A G C T A G C T G T A C A G T C T G A C
A T C G T C A G C T A G T C G A G C T A C G T A C G T A G A C T G T A C T G A C A C G T