Information for NF1(CTF)/LNCAP-NF1-ChIP-Seq(Unpublished)/Homer (Motif 229)

A G T C G A C T C A G T A C T G C T A G T G A C G C T A A T G C G C A T A T C G C G A T A C T G G A T C G T A C G T C A C T G A
Reverse Opposite:
G A C T C A G T A C T G C T A G T G A C G C T A T A G C C G T A T A C G C G A T A C T G G A T C G T A C G T C A C T G A T C A G
p-value:
log p-value:-1.325e+04
FDR:0.000
Information Content per bp:1.599
Number of Target Sequences with motif
Percentage of Target Sequences with motif
Number of Background Sequences with motif
Percentage of Background Sequences with motif
Average Position of motif in Targets0 +/- 0bp
Average Position of motif in Background0 +/- 0bp
Strand Bias (log2 ratio + to - strand density)0
Multiplicity (# of sites on avg that occur together)1
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NF1(CTF)/LNCAP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:1
Score:1.00
Offset:0
Orientation:forward strand
Alignment:CTTGGCANNNTGCCAA
CTTGGCANNNTGCCAA
 A G T C G A C T C A G T A C T G C T A G T G A C G C T A A T G C G C A T A T C G C G A T A C T G G A T C G T A C G T C A C T G A
A G T C G A C T C A G T A C T G C T A G T G A C G C T A A T G C G C A T A T C G C G A T A C T G G A T C G T A C G T C A C T G A

NFIX(var.2)/MA1528.1/Jaspar

Match Rank:2
Score:0.95
Offset:0
Orientation:reverse strand
Alignment:CTTGGCANNNTGCCAA-
NNTGGCACNNTGCCAAN
 A G T C G A C T C A G T A C T G C T A G T G A C G C T A A T G C G C A T A T C G C G A T A C T G G A T C G T A C G T C A C T G A A C G T
T A G C G A T C C A G T A C T G A C T G G T A C C T G A G T A C T A G C T C A G G A C T C A T G A G T C A G T C T G C A C G T A T A G C

NFIC(var.2)/MA1527.1/Jaspar

Match Rank:3
Score:0.95
Offset:0
Orientation:reverse strand
Alignment:CTTGGCANNNTGCCAA-
NTTGGCACNNNGCCAAN
 A G T C G A C T C A G T A C T G C T A G T G A C G C T A A T G C G C A T A T C G C G A T A C T G G A T C G T A C G T C A C T G A A C G T
T A C G G A C T A C G T A C T G A T C G A G T C C T G A A G T C A T G C T C A G G A C T A C T G A T G C A G T C G T C A C T G A T A G C

NFIB/MA1643.1/Jaspar

Match Rank:4
Score:0.93
Offset:-2
Orientation:reverse strand
Alignment:--CTTGGCANNNTGCCAA---
NNCTTGGCACNATGCCAGGNN
 A C G T A C G T A G T C G A C T C A G T A C T G C T A G T G A C G C T A A T G C G C A T A T C G C G A T A C T G G A T C G T A C G T C A C T G A A C G T A C G T A C G T
C G A T C T A G A G T C G A C T C A G T T C A G T A C G T G A C G C T A A G T C G T C A T C G A C G A T A C T G G A T C T A G C G T C A C T A G T C A G G A T C G C T A

Tlx?(NR)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer

Match Rank:5
Score:0.92
Offset:1
Orientation:forward strand
Alignment:CTTGGCANNNTGCCAA
-CTGGCAGNCTGCCA-
 A G T C G A C T C A G T A C T G C T A G T G A C G C T A A T G C G C A T A T C G C G A T A C T G G A T C G T A C G T C A C T G A
A C G T A G T C C G A T A C T G A T C G T G A C G C T A C A T G A T C G T G A C C G A T A C T G T A G C G T A C G T C A A C G T

NFIC::TLX1/MA0119.1/Jaspar

Match Rank:6
Score:0.91
Offset:1
Orientation:reverse strand
Alignment:CTTGGCANNNTGCCAA
-TTGGCATGGTGCCA-
 A G T C G A C T C A G T A C T G C T A G T G A C G C T A A T G C G C A T A T C G C G A T A C T G G A T C G T A C G T C A C T G A
A C G T G A C T A C G T A C T G A C T G A G T C C G T A G A C T A T C G A T C G C A G T A C T G A G T C A G T C C G T A A C G T

NFIX/MA0671.1/Jaspar

Match Rank:7
Score:0.68
Offset:0
Orientation:reverse strand
Alignment:CTTGGCANNNTGCCAA
NTTGGCANN-------
 A G T C G A C T C A G T A C T G C T A G T G A C G C T A A T G C G C A T A T C G C G A T A C T G G A T C G T A C G T C A C T G A
A T G C G A C T A C G T A C T G T A C G T G A C C G T A G T A C A T C G A C G T A C G T A C G T A C G T A C G T A C G T A C G T

NFIA/MA0670.1/Jaspar

Match Rank:8
Score:0.63
Offset:-1
Orientation:reverse strand
Alignment:-CTTGGCANNNTGCCAA
NNTTGGCANN-------
 A C G T A G T C G A C T C A G T A C T G C T A G T G A C G C T A A T G C G C A T A T C G C G A T A C T G G A T C G T A C G T C A C T G A
G C T A A G T C A C G T A C G T A C T G A C T G A G T C C G T A G T A C A G T C A C G T A C G T A C G T A C G T A C G T A C G T A C G T

NFIC/MA0161.2/Jaspar

Match Rank:9
Score:0.63
Offset:-2
Orientation:forward strand
Alignment:--CTTGGCANNNTGCCAA
TACTTGGCAGA-------
 A C G T A C G T A G T C G A C T C A G T A C T G C T A G T G A C G C T A A T G C G C A T A T C G C G A T A C T G G A T C G T A C G T C A C T G A
G A C T G C T A T G A C A C G T G C A T T C A G C A T G G A T C C G T A A T C G C G T A A C G T A C G T A C G T A C G T A C G T A C G T A C G T

RIM101/Literature(Harbison)/Yeast

Match Rank:10
Score:0.63
Offset:0
Orientation:reverse strand
Alignment:CTTGGCANNNTGCCAA
CTTGGCA---------
 A G T C G A C T C A G T A C T G C T A G T G A C G C T A A T G C G C A T A T C G C G A T A C T G G A T C G T A C G T C A C T G A
A G T C A C G T A C G T A C T G A C T G A G T C C G T A A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T