Information for NeuroD1(bHLH)/Islet-NeuroD1-ChIP-Seq(GSE30298)/Homer (Motif 225)

T C A G T G A C G T A C C G T A A C G T T G A C A C G T T C A G A G C T G A C T
Reverse Opposite:
C T G A T C G A A G T C G T C A A C T G T G C A G C A T A C T G A C T G A G T C
p-value:1e-2456
log p-value:-5.656e+03
FDR:NA
Information Content per bp:1.743
Number of Target Sequences with motif4616.0
Percentage of Target Sequences with motif54.33%
Number of Background Sequences with motif3592.2
Percentage of Background Sequences with motif8.94%
Average Position of motif in Targets0 +/- 0bp
Average Position of motif in Background0 +/- 0bp
Strand Bias (log2 ratio + to - strand density)0
Multiplicity (# of sites on avg that occur together)1
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NeuroD1(bHLH)/Islet-NeuroD1-ChIP-Seq(GSE30298)/Homer

Match Rank:1
Score:1.00
Offset:0
Orientation:forward strand
Alignment:GCCATCTGTT
GCCATCTGTT
 T C A G T G A C G T A C C G T A A C G T T G A C A C G T T C A G A G C T G A C T
T C A G T G A C G T A C C G T A A C G T T G A C A C G T T C A G A G C T G A C T

NeuroG2(bHLH)/Fibroblast-NeuroG2-ChIP-Seq(GSE75910)/Homer

Match Rank:2
Score:0.98
Offset:0
Orientation:forward strand
Alignment:GCCATCTGTT
ACCATCTGTT
 T C A G T G A C G T A C C G T A A C G T T G A C A C G T T C A G A G C T G A C T
T C G A T G A C G T A C C G T A C A G T T G A C A C G T A C T G A G C T A G C T

NEUROD1/MA1109.1/Jaspar

Match Rank:3
Score:0.98
Offset:-2
Orientation:reverse strand
Alignment:--GCCATCTGTT-
NNNCCATCTGTNN
 A C G T A C G T T C A G T G A C G T A C C G T A A C G T T G A C A C G T T C A G A G C T G A C T A C G T
A T G C A G C T T C A G T G A C G T A C C G T A A C G T T G A C G C A T A C T G A G C T A G T C G T A C

NEUROG2(var.2)/MA1642.1/Jaspar

Match Rank:4
Score:0.97
Offset:-1
Orientation:reverse strand
Alignment:-GCCATCTGTT--
NNCCATCTGTNNN
 A C G T T C A G T G A C G T A C C G T A A C G T T G A C A C G T T C A G A G C T G A C T A C G T A C G T
A C G T T C A G T G A C G T A C C T G A A C G T T G A C A G C T A T C G A C G T A G C T G A T C G A T C

Olig2(bHLH)/Neuron-Olig2-ChIP-Seq(GSE30882)/Homer

Match Rank:5
Score:0.94
Offset:0
Orientation:forward strand
Alignment:GCCATCTGTT
RCCATMTGTT
 T C A G T G A C G T A C C G T A A C G T T G A C A C G T T C A G A G C T G A C T
C T G A T G A C T G A C C G T A A C G T T G A C A G C T C T A G A C G T G A C T

Atoh1(bHLH)/Cerebellum-Atoh1-ChIP-Seq(GSE22111)/Homer

Match Rank:6
Score:0.92
Offset:0
Orientation:reverse strand
Alignment:GCCATCTGTT--
GCCAGCTGBTNB
 T C A G T G A C G T A C C G T A A C G T T G A C A C G T T C A G A G C T G A C T A C G T A C G T
T C A G T A G C A G T C C G T A A C T G G T A C A C G T A C T G A T C G A G C T T G C A A G T C

HAND2/MA1638.1/Jaspar

Match Rank:7
Score:0.92
Offset:0
Orientation:reverse strand
Alignment:GCCATCTGTT
NNCATCTGNN
 T C A G T G A C G T A C C G T A A C G T T G A C A C G T T C A G A G C T G A C T
C T A G T G A C A G T C T C G A A G C T T G A C A G C T T A C G A C T G G A C T

TCF4(bHLH)/SHSY5Y-TCF4-ChIP-Seq(GSE96915)/Homer

Match Rank:8
Score:0.91
Offset:0
Orientation:forward strand
Alignment:GCCATCTGTT
SMCATCTGKH
 T C A G T G A C G T A C C G T A A C G T T G A C A C G T T C A G A G C T G A C T
T A C G T G C A A G T C C G T A A C G T T G A C A C G T A C T G A C T G G C A T

PB0193.1_Tcfe2a_2/Jaspar

Match Rank:9
Score:0.90
Offset:-4
Orientation:reverse strand
Alignment:----GCCATCTGTT---
CCNNACCATCTGGCCTN
 A C G T A C G T A C G T A C G T T C A G T G A C G T A C C G T A A C G T T G A C A C G T T C A G A G C T G A C T A C G T A C G T A C G T
A G T C T A G C T A C G C T A G T C G A G T A C A G T C C G T A A G C T T G A C A G C T C A T G A T C G G T A C G A T C A G C T C A G T

Ptf1a/MA1618.1/Jaspar

Match Rank:10
Score:0.89
Offset:-2
Orientation:reverse strand
Alignment:--GCCATCTGTT-
NNAACATCTGTNN
 A C G T A C G T T C A G T G A C G T A C C G T A A C G T T G A C A C G T T C A G A G C T G A C T A C G T
C A G T T G C A T C G A T G C A G A T C C T G A A C G T T G A C A G C T C T A G A C G T A C G T G C A T