Information for Nanog(Homeobox)/mES-Nanog-ChIP-Seq(GSE11724)/Homer (Motif 224)

C T A G T A C G G A T C G T A C G C T A A G C T A G C T G T C A T C G A T A G C
Reverse Opposite:
A T C G A G C T C A G T T C G A C T G A C G A T C A T G C T A G A T G C G A T C
p-value:
log p-value:-2.021e+03
FDR:0.000
Information Content per bp:1.604
Number of Target Sequences with motif
Percentage of Target Sequences with motif
Number of Background Sequences with motif
Percentage of Background Sequences with motif
Average Position of motif in Targets0 +/- 0bp
Average Position of motif in Background0 +/- 0bp
Strand Bias (log2 ratio + to - strand density)0
Multiplicity (# of sites on avg that occur together)1
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Nanog(Homeobox)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:1
Score:1.00
Offset:0
Orientation:forward strand
Alignment:GGCCATTAAC
GGCCATTAAC
 C T A G T A C G G A T C G T A C G C T A A G C T A G C T G T C A T C G A T A G C
C T A G T A C G G A T C G T A C G C T A A G C T A G C T G T C A T C G A T A G C

ftz/dmmpmm(SeSiMCMC)/fly

Match Rank:2
Score:0.89
Offset:0
Orientation:reverse strand
Alignment:GGCCATTAAC
GNCCATTAA-
 C T A G T A C G G A T C G T A C G C T A A G C T A G C T G T C A T C G A T A G C
C T A G A T C G G T A C G T A C G C T A A C G T G C A T C G T A C T G A A C G T

ftz/dmmpmm(Pollard)/fly

Match Rank:3
Score:0.88
Offset:0
Orientation:reverse strand
Alignment:GGCCATTAAC
GNCAATTA--
 C T A G T A C G G A T C G T A C G C T A A G C T A G C T G T C A T C G A T A G C
C T A G C T A G G A T C G T C A G T C A C G A T G C A T C G T A A C G T A C G T

Ubx/dmmpmm(Bergman)/fly

Match Rank:4
Score:0.87
Offset:-4
Orientation:forward strand
Alignment:----GGCCATTAAC-----
ACNANGCCATTAANCCCNC
 A C G T A C G T A C G T A C G T C T A G T A C G G A T C G T A C G C T A A G C T A G C T G T C A T C G A T A G C A C G T A C G T A C G T A C G T A C G T
G T C A A G T C C T A G C G T A T C G A A T C G A G T C G T A C T C G A G A C T C G A T C G T A C T G A T A C G A G T C A G T C A G T C G A C T G T A C

Hoxa9(Homeobox)/ChickenMSG-Hoxa9.Flag-ChIP-Seq(GSE86088)/Homer

Match Rank:5
Score:0.87
Offset:0
Orientation:forward strand
Alignment:GGCCATTAAC
RGCAATNAAA
 C T A G T A C G G A T C G T A C G C T A A G C T A G C T G T C A T C G A T A G C
C T A G T A C G G A T C G T C A T G C A A C G T T G C A G C T A T C G A T G C A

tup/MA0248.1/Jaspar

Match Rank:6
Score:0.87
Offset:2
Orientation:reverse strand
Alignment:GGCCATTAAC
--CAATTAA-
 C T A G T A C G G A T C G T A C G C T A A G C T A G C T G T C A T C G A T A G C
A C G T A C G T G A T C G T C A G T C A A C G T A C G T C G T A C G T A A C G T

ftz/dmmpmm(Bigfoot)/fly

Match Rank:7
Score:0.86
Offset:2
Orientation:forward strand
Alignment:GGCCATTAAC
--CAATTAAA
 C T A G T A C G G A T C G T A C G C T A A G C T A G C T G T C A T C G A T A G C
A C G T A C G T G T A C G T C A G C T A A C G T G C A T T G C A C T G A T G C A

HOXB8/MA1502.1/Jaspar

Match Rank:8
Score:0.86
Offset:1
Orientation:forward strand
Alignment:GGCCATTAAC
-GCAATTAC-
 C T A G T A C G G A T C G T A C G C T A A G C T A G C T G T C A T C G A T A G C
A C G T A C T G A G T C T G C A C G T A A C G T C A G T C G T A T G A C A C G T

HOXD8/MA0910.2/Jaspar

Match Rank:9
Score:0.85
Offset:1
Orientation:forward strand
Alignment:GGCCATTAAC
-GCAATTAC-
 C T A G T A C G G A T C G T A C G C T A A G C T A G C T G T C A T C G A T A G C
A C G T T C A G A G T C T G C A C G T A A C G T C A G T C G T A T G A C A C G T

ftz/dmmpmm(Bergman)/fly

Match Rank:10
Score:0.85
Offset:-1
Orientation:reverse strand
Alignment:-GGCCATTAAC--
NGGTCATTAACNN
 A C G T C T A G T A C G G A T C G T A C G C T A A G C T A G C T G T C A T C G A T A G C A C G T A C G T
G T C A C A T G T A C G G A C T T G A C C T G A A C G T A C G T C G T A T C G A A G T C A C T G A G T C