Information for AMYB(HTH)/Testes-AMYB-ChIP-Seq(GSE44588)/Homer (Motif 218)

G A C T C T A G C T A G A G T C T G C A A C T G A C G T A C G T C T A G T C A G
Reverse Opposite:
A G T C G A T C C G T A C G T A A G T C A C G T A C T G G A T C G A T C C T G A
p-value:1e-938
log p-value:-2.162e+03
FDR:NA
Information Content per bp:1.700
Number of Target Sequences with motif3022.0
Percentage of Target Sequences with motif28.06%
Number of Background Sequences with motif2560.9
Percentage of Background Sequences with motif7.14%
Average Position of motif in Targets0 +/- 0bp
Average Position of motif in Background0 +/- 0bp
Strand Bias (log2 ratio + to - strand density)0
Multiplicity (# of sites on avg that occur together)1
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

AMYB(HTH)/Testes-AMYB-ChIP-Seq(GSE44588)/Homer

Match Rank:1
Score:1.00
Offset:0
Orientation:forward strand
Alignment:TGGCAGTTGG
TGGCAGTTGG
 G A C T C T A G C T A G A G T C T G C A A C T G A C G T A C G T C T A G T C A G
G A C T C T A G C T A G A G T C T G C A A C T G A C G T A C G T C T A G T C A G

PB0149.1_Myb_2/Jaspar

Match Rank:2
Score:0.96
Offset:-3
Orientation:reverse strand
Alignment:---TGGCAGTTGG---
NNNTGGCAGTTGGTNN
 A C G T A C G T A C G T G A C T C T A G C T A G A G T C T G C A A C T G A C G T A C G T C T A G T C A G A C G T A C G T A C G T
C T A G T A G C T C G A G A C T C T A G C T A G A G T C C T G A A C T G A C G T G A C T C T A G T C A G C A G T G T A C T A C G

MYB(HTH)/ERMYB-Myb-ChIPSeq(GSE22095)/Homer

Match Rank:3
Score:0.94
Offset:1
Orientation:forward strand
Alignment:TGGCAGTTGG
-GGCVGTTR-
 G A C T C T A G C T A G A G T C T G C A A C T G A C G T A C G T C T A G T C A G
A C G T C T A G C T A G A G T C T C A G A C T G A C G T A C G T C T G A A C G T

PB0150.1_Mybl1_2/Jaspar

Match Rank:4
Score:0.93
Offset:-2
Orientation:reverse strand
Alignment:--TGGCAGTTGG---
CACGGCAGTTGGTNN
 A C G T A C G T G A C T C T A G C T A G A G T C T G C A A C T G A C G T A C G T C T A G T C A G A C G T A C G T A C G T
T G A C C G T A A G T C C A T G C T A G A G T C T C G A A C T G A C G T C A G T C T A G C T A G A C G T T A G C T A C G

BMYB(HTH)/Hela-BMYB-ChIP-Seq(GSE27030)/Homer

Match Rank:5
Score:0.91
Offset:0
Orientation:reverse strand
Alignment:TGGCAGTTGG
BRRCVGTTDN
 G A C T C T A G C T A G A G T C T G C A A C T G A C G T A C G T C T A G T C A G
A G C T C T A G C T A G A G T C T G C A A C T G A C G T C G A T C G T A T C A G

MYB/MA0100.3/Jaspar

Match Rank:6
Score:0.89
Offset:1
Orientation:reverse strand
Alignment:TGGCAGTTGG-
-NNCAGTTGNN
 G A C T C T A G C T A G A G T C T G C A A C T G A C G T A C G T C T A G T C A G A C G T
A C G T C A T G C T G A A G T C T G C A A C T G C G A T G A C T T C A G T C A G C A G T

AtMYB77(MYB)/Arabidopsis thaliana/AthaMap

Match Rank:7
Score:0.88
Offset:-3
Orientation:forward strand
Alignment:---TGGCAGTTGG
AAGTGACAGTTAC
 A C G T A C G T A C G T G A C T C T A G C T A G A G T C T G C A A C T G A C G T A C G T C T A G T C A G
T G C A T C G A C A T G A G C T T C A G C T G A A G T C C T A G A C T G A C G T A C G T C T G A A T G C

F3A4.140/MA0575.1/Jaspar

Match Rank:8
Score:0.88
Offset:-3
Orientation:forward strand
Alignment:---TGGCAGTTGG
AAGTGACAGTTAC
 A C G T A C G T A C G T G A C T C T A G C T A G A G T C T G C A A C T G A C G T A C G T C T A G T C A G
T G C A T C G A C A T G A G C T T C A G C T G A A G T C C T A G A C T G A C G T A C G T C T G A A T G C

MYB77(MYB)/col-MYB77-DAP-Seq(GSE60143)/Homer

Match Rank:9
Score:0.87
Offset:0
Orientation:reverse strand
Alignment:TGGCAGTTGG
GKRCVGTTRN
 G A C T C T A G C T A G A G T C T G C A A C T G A C G T A C G T C T A G T C A G
T A C G C A T G C T G A G T A C T C G A A C T G A C G T A C G T C T A G C T G A

GAMYB(MYB)/Hordeum vulgare/AthaMap

Match Rank:10
Score:0.87
Offset:1
Orientation:reverse strand
Alignment:TGGCAGTTGG
-GGCGGTTG-
 G A C T C T A G C T A G A G T C T G C A A C T G A C G T A C G T C T A G T C A G
A C G T A C T G C A G T A G T C A T C G A C T G A C G T A C G T C T A G A C G T