Information for Mef2d(MADS)/Retina-Mef2d-ChIP-Seq(GSE61391)/Homer (Motif 214)

C A T G A G T C A G C T C G T A C G A T C G A T G C A T G C A T C G A T C T G A C A T G T G A C
Reverse Opposite:
A C T G G T A C G A C T G C T A C G T A C G T A C G T A G C T A G C A T C T G A T C A G G T A C
p-value:1e-1257
log p-value:-2.895e+03
FDR:NA
Information Content per bp:1.662
Number of Target Sequences with motif1321.0
Percentage of Target Sequences with motif8.78%
Number of Background Sequences with motif134.0
Percentage of Background Sequences with motif0.40%
Average Position of motif in Targets0 +/- 0bp
Average Position of motif in Background0 +/- 0bp
Strand Bias (log2 ratio + to - strand density)0
Multiplicity (# of sites on avg that occur together)1
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Mef2d(MADS)/Retina-Mef2d-ChIP-Seq(GSE61391)/Homer

Match Rank:1
Score:1.00
Offset:0
Orientation:forward strand
Alignment:GCTATTTTTAGC
GCTATTTTTAGC
 C A T G A G T C A G C T C G T A C G A T C G A T G C A T G C A T C G A T C T G A C A T G T G A C
C A T G A G T C A G C T C G T A C G A T C G A T G C A T G C A T C G A T C T G A C A T G T G A C

Mef2c(MADS)/GM12878-Mef2c-ChIP-Seq(GSE32465)/Homer

Match Rank:2
Score:0.98
Offset:0
Orientation:reverse strand
Alignment:GCTATTTTTAGC
KCTATTTTTRGH
 C A T G A G T C A G C T C G T A C G A T C G A T G C A T G C A T C G A T C T G A C A T G T G A C
C A T G A G T C G A C T C G T A C G A T G C A T G C A T G C A T C G A T C T G A C A T G G T A C

Mef2b(MADS)/HEK293-Mef2b.V5-ChIP-Seq(GSE67450)/Homer

Match Rank:3
Score:0.96
Offset:0
Orientation:forward strand
Alignment:GCTATTTTTAGC
GCTATTTTTGGM
 C A T G A G T C A G C T C G T A C G A T C G A T G C A T G C A T C G A T C T G A C A T G T G A C
C A T G A G T C G A C T C G T A C G A T G C A T G A C T G C A T C G A T C T A G C A T G T G A C

MEF2C/MA0497.1/Jaspar

Match Rank:4
Score:0.96
Offset:-1
Orientation:reverse strand
Alignment:-GCTATTTTTAGC--
TTCTATTTTTAGNNN
 A C G T C A T G A G T C A G C T C G T A C G A T C G A T G C A T G C A T C G A T C T G A C A T G T G A C A C G T A C G T
C G A T C A G T A G T C A G C T C T G A G C A T G C A T G A C T G A C T C G A T C T G A C A T G G T A C G C T A G A C T

MEF2A/MA0052.4/Jaspar

Match Rank:5
Score:0.95
Offset:-2
Orientation:reverse strand
Alignment:--GCTATTTTTAGC-
NNTCTATTTTTAGNN
 A C G T A C G T C A T G A G T C A G C T C G T A C G A T C G A T G C A T G C A T C G A T C T G A C A T G T G A C A C G T
C G A T C G A T C A G T G A T C G A C T C G T A G C A T G C A T G C A T G C A T G C A T C T G A C T A G G T C A G C T A

MEF2B/MA0660.1/Jaspar

Match Rank:6
Score:0.95
Offset:0
Orientation:reverse strand
Alignment:GCTATTTTTAGC
GCTATTTATAGC
 C A T G A G T C A G C T C G T A C G A T C G A T G C A T G C A T C G A T C T G A C A T G T G A C
C A T G A G T C C A G T C G T A C G A T C G A T G C A T C G T A C G A T C T G A C A T G G A T C

MEF2D/MA0773.1/Jaspar

Match Rank:7
Score:0.94
Offset:0
Orientation:reverse strand
Alignment:GCTATTTTTAGC
TCTATTTATAGN
 C A T G A G T C A G C T C G T A C G A T C G A T G C A T G C A T C G A T C T G A C A T G T G A C
C A G T A G T C A G C T C G T A C G A T G C A T C G A T G C T A C A G T C T G A C T A G G A C T

Mef2a(MADS)/HL1-Mef2a.biotin-ChIP-Seq(GSE21529)/Homer

Match Rank:8
Score:0.93
Offset:1
Orientation:reverse strand
Alignment:GCTATTTTTAGC
-CTATTTTTGG-
 C A T G A G T C A G C T C G T A C G A T C G A T G C A T G C A T C G A T C T G A C A T G T G A C
A C G T A T G C A G C T G T C A C G A T C G A T A G C T G A C T G C A T C T G A C A T G A C G T

Mef2/dmmpmm(Papatsenko)/fly

Match Rank:9
Score:0.89
Offset:1
Orientation:forward strand
Alignment:GCTATTTTTAGC
-TTATTTTTAG-
 C A T G A G T C A G C T C G T A C G A T C G A T G C A T G C A T C G A T C T G A C A T G T G A C
A C G T A G C T A C G T C G T A A C G T A C G T C G A T C G A T A C G T C T G A C T A G A C G T

RLM1(MacIsaac)/Yeast

Match Rank:10
Score:0.82
Offset:2
Orientation:forward strand
Alignment:GCTATTTTTAGC
--TATTTATAGA
 C A T G A G T C A G C T C G T A C G A T C G A T G C A T G C A T C G A T C T G A C A T G T G A C
A C G T A C G T A G C T C G T A C G A T C A G T C A G T C G T A C G A T C T G A A T C G C T G A